Hb_000325_070

Information

Type -
Description -
Location Contig325: 165476-173313
Sequence    

Annotation

kegg
ID rcu:RCOM_0855230
description multidrug resistance protein 1, 2, putative (EC:3.6.3.44)
nr
ID AIU41631.1
description ABC transporter family protein [Hevea brasiliensis]
swissprot
ID Q9LJX0
description ABC transporter B family member 19 OS=Arabidopsis thaliana GN=ABCB19 PE=1 SV=1
trembl
ID A0A097P9R2
description ABC transporter family protein OS=Hevea brasiliensis GN=ABCB19 PE=2 SV=1
Gene Ontology
ID GO:0016021
description abc transporter b family member 19

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34261: 165665-173279 , PASA_asmbl_34262: 171206-171707
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000325_070 0.0 - - ABC transporter family protein [Hevea brasiliensis]
2 Hb_026415_010 0.0730041986 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
3 Hb_005694_150 0.0959544328 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
4 Hb_000375_150 0.0960797547 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004879_030 0.0999015979 - - PREDICTED: uncharacterized protein LOC105124685 [Populus euphratica]
6 Hb_004724_300 0.1005641202 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
7 Hb_000015_230 0.1048461211 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF3.6-like isoform X2 [Populus euphratica]
8 Hb_004945_050 0.1073296233 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0008s08740g [Populus trichocarpa]
9 Hb_009557_080 0.1101206134 - - PREDICTED: glutaredoxin-C9-like [Populus euphratica]
10 Hb_050847_030 0.1123768044 - - PREDICTED: cytochrome P450 714A1-like [Populus euphratica]
11 Hb_001677_120 0.1157316125 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
12 Hb_013691_060 0.1175946174 - - PREDICTED: uncharacterized protein LOC105119066 [Populus euphratica]
13 Hb_000813_090 0.1209736507 - - hypothetical protein CARUB_v10019318mg [Capsella rubella]
14 Hb_115114_010 0.1232036083 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002725_080 0.126396674 - - protein phosphatase 2c, putative [Ricinus communis]
16 Hb_001821_050 0.1280120681 - - hypothetical protein CICLE_v10032084mg [Citrus clementina]
17 Hb_000181_390 0.1296977694 - - unknown [Lotus japonicus]
18 Hb_000060_100 0.1311907026 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
19 Hb_152414_010 0.1316333108 desease resistance Gene Name: NB-ARC hypothetical protein PRUPE_ppa024232mg [Prunus persica]
20 Hb_001046_040 0.1358894 - - UDP-glucosyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000325_070 Hb_000325_070 Hb_026415_010 Hb_026415_010 Hb_000325_070--Hb_026415_010 Hb_005694_150 Hb_005694_150 Hb_000325_070--Hb_005694_150 Hb_000375_150 Hb_000375_150 Hb_000325_070--Hb_000375_150 Hb_004879_030 Hb_004879_030 Hb_000325_070--Hb_004879_030 Hb_004724_300 Hb_004724_300 Hb_000325_070--Hb_004724_300 Hb_000015_230 Hb_000015_230 Hb_000325_070--Hb_000015_230 Hb_026415_010--Hb_004879_030 Hb_009403_010 Hb_009403_010 Hb_026415_010--Hb_009403_010 Hb_000813_090 Hb_000813_090 Hb_026415_010--Hb_000813_090 Hb_115114_010 Hb_115114_010 Hb_026415_010--Hb_115114_010 Hb_152414_010 Hb_152414_010 Hb_026415_010--Hb_152414_010 Hb_050847_030 Hb_050847_030 Hb_005694_150--Hb_050847_030 Hb_005694_150--Hb_000375_150 Hb_000365_340 Hb_000365_340 Hb_005694_150--Hb_000365_340 Hb_013691_060 Hb_013691_060 Hb_005694_150--Hb_013691_060 Hb_000892_030 Hb_000892_030 Hb_005694_150--Hb_000892_030 Hb_000329_170 Hb_000329_170 Hb_000375_150--Hb_000329_170 Hb_002725_080 Hb_002725_080 Hb_000375_150--Hb_002725_080 Hb_000181_390 Hb_000181_390 Hb_000375_150--Hb_000181_390 Hb_000375_150--Hb_050847_030 Hb_004879_030--Hb_152414_010 Hb_004879_030--Hb_115114_010 Hb_009557_080 Hb_009557_080 Hb_004879_030--Hb_009557_080 Hb_006358_030 Hb_006358_030 Hb_004879_030--Hb_006358_030 Hb_001821_050 Hb_001821_050 Hb_004724_300--Hb_001821_050 Hb_134022_010 Hb_134022_010 Hb_004724_300--Hb_134022_010 Hb_004724_300--Hb_002725_080 Hb_007102_010 Hb_007102_010 Hb_004724_300--Hb_007102_010 Hb_004112_050 Hb_004112_050 Hb_004724_300--Hb_004112_050 Hb_001677_120 Hb_001677_120 Hb_004724_300--Hb_001677_120 Hb_132259_010 Hb_132259_010 Hb_000015_230--Hb_132259_010 Hb_000015_230--Hb_115114_010 Hb_003073_040 Hb_003073_040 Hb_000015_230--Hb_003073_040 Hb_000015_230--Hb_000813_090 Hb_000140_220 Hb_000140_220 Hb_000015_230--Hb_000140_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.506695 64.555 17.1394 31.5249 0.184649 0.604989
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0150198 0.0144437 1.45975 25.241

CAGE analysis