Hb_000326_010

Information

Type -
Description -
Location Contig326: 39247-40386
Sequence    

Annotation

kegg
ID pop:POPTR_0009s11870g
description POPTRDRAFT_833063; hypothetical protein
nr
ID XP_002313047.1
description hypothetical protein POPTR_0009s11870g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9HRN4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s11870g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34296: 39240-40367
cDNA
(Sanger)
(ID:Location)		 053_K12.ab1: 39240-40367

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000326_010 0.0 - - hypothetical protein POPTR_0009s11870g [Populus trichocarpa]
2 Hb_001442_020 0.101405811 - - unknown [Populus trichocarpa]
3 Hb_000190_060 0.1058536198 - - PREDICTED: uncharacterized protein LOC105644688 isoform X1 [Jatropha curcas]
4 Hb_000417_110 0.1063235098 - - PREDICTED: uncharacterized protein LOC105649681 [Jatropha curcas]
5 Hb_000061_480 0.1100833999 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 3 [Jatropha curcas]
6 Hb_000318_380 0.1122012482 - - PREDICTED: diphthamide biosynthesis protein 3-like [Jatropha curcas]
7 Hb_001951_110 0.112489481 - - PREDICTED: DNA-binding protein DDB_G0278111 [Jatropha curcas]
8 Hb_003878_190 0.1128736608 - - hypothetical protein POPTR_0011s11040g [Populus trichocarpa]
9 Hb_007101_150 0.113411673 - - hypothetical protein CICLE_v10033984mg [Citrus clementina]
10 Hb_001818_020 0.1135663423 - - PREDICTED: 60S ribosomal protein L21-1 [Phoenix dactylifera]
11 Hb_002107_130 0.1144411372 - - protein with unknown function [Ricinus communis]
12 Hb_003058_070 0.1172639862 - - PREDICTED: uncharacterized protein LOC105628964 [Jatropha curcas]
13 Hb_003001_060 0.1181051823 - - wound-responsive family protein [Populus trichocarpa]
14 Hb_001214_030 0.1181998624 - - hypothetical protein POPTR_0006s10280g [Populus trichocarpa]
15 Hb_002296_060 0.1185189849 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Fragaria vesca subsp. vesca]
16 Hb_001257_080 0.118633361 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001379_060 0.1195530984 - - PREDICTED: uncharacterized protein LOC105650815 isoform X1 [Jatropha curcas]
18 Hb_000928_240 0.1198573641 - - PREDICTED: uncharacterized protein LOC105632515 [Jatropha curcas]
19 Hb_000025_600 0.1206608615 - - PREDICTED: 30S ribosomal protein S17, chloroplastic-like [Jatropha curcas]
20 Hb_003927_140 0.1218067222 - - PREDICTED: nudix hydrolase 9 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000326_010 Hb_000326_010 Hb_001442_020 Hb_001442_020 Hb_000326_010--Hb_001442_020 Hb_000190_060 Hb_000190_060 Hb_000326_010--Hb_000190_060 Hb_000417_110 Hb_000417_110 Hb_000326_010--Hb_000417_110 Hb_000061_480 Hb_000061_480 Hb_000326_010--Hb_000061_480 Hb_000318_380 Hb_000318_380 Hb_000326_010--Hb_000318_380 Hb_001951_110 Hb_001951_110 Hb_000326_010--Hb_001951_110 Hb_002110_120 Hb_002110_120 Hb_001442_020--Hb_002110_120 Hb_000200_100 Hb_000200_100 Hb_001442_020--Hb_000200_100 Hb_001269_630 Hb_001269_630 Hb_001442_020--Hb_001269_630 Hb_007101_150 Hb_007101_150 Hb_001442_020--Hb_007101_150 Hb_008173_090 Hb_008173_090 Hb_001442_020--Hb_008173_090 Hb_000522_080 Hb_000522_080 Hb_001442_020--Hb_000522_080 Hb_001214_030 Hb_001214_030 Hb_000190_060--Hb_001214_030 Hb_009252_130 Hb_009252_130 Hb_000190_060--Hb_009252_130 Hb_000190_060--Hb_000417_110 Hb_000483_160 Hb_000483_160 Hb_000190_060--Hb_000483_160 Hb_000025_530 Hb_000025_530 Hb_000190_060--Hb_000025_530 Hb_003058_070 Hb_003058_070 Hb_000190_060--Hb_003058_070 Hb_000634_050 Hb_000634_050 Hb_000417_110--Hb_000634_050 Hb_001584_070 Hb_001584_070 Hb_000417_110--Hb_001584_070 Hb_000417_110--Hb_001951_110 Hb_000798_030 Hb_000798_030 Hb_000417_110--Hb_000798_030 Hb_000417_110--Hb_003058_070 Hb_003001_060 Hb_003001_060 Hb_000417_110--Hb_003001_060 Hb_000061_480--Hb_000190_060 Hb_000061_480--Hb_009252_130 Hb_171900_050 Hb_171900_050 Hb_000061_480--Hb_171900_050 Hb_000703_140 Hb_000703_140 Hb_000061_480--Hb_000703_140 Hb_000061_480--Hb_001214_030 Hb_000531_020 Hb_000531_020 Hb_000061_480--Hb_000531_020 Hb_000152_430 Hb_000152_430 Hb_000318_380--Hb_000152_430 Hb_001824_070 Hb_001824_070 Hb_000318_380--Hb_001824_070 Hb_007747_090 Hb_007747_090 Hb_000318_380--Hb_007747_090 Hb_000928_240 Hb_000928_240 Hb_000318_380--Hb_000928_240 Hb_001477_110 Hb_001477_110 Hb_000318_380--Hb_001477_110 Hb_011139_020 Hb_011139_020 Hb_000318_380--Hb_011139_020 Hb_001804_040 Hb_001804_040 Hb_001951_110--Hb_001804_040 Hb_000866_300 Hb_000866_300 Hb_001951_110--Hb_000866_300 Hb_004204_030 Hb_004204_030 Hb_001951_110--Hb_004204_030 Hb_000392_270 Hb_000392_270 Hb_001951_110--Hb_000392_270 Hb_002529_100 Hb_002529_100 Hb_001951_110--Hb_002529_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.6004 5.89128 5.17587 6.07661 29.677 15.3433
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.9898 42.9926 16.0782 7.87094 0.944405

CAGE analysis