Hb_000326_050

Information

Type -
Description -
Location Contig326: 60792-66425
Sequence    

Annotation

kegg
ID mdm:103414573
description probable phenylalanine--tRNA ligase alpha subunit
nr
ID XP_007042194.1
description Phenylalanyl-tRNA synthetase alpha chain isoform 2 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061DZ74
description Phenylalanyl-tRNA synthetase alpha chain isoform 2 OS=Theobroma cacao GN=TCM_006889 PE=4 SV=1
Gene Ontology
ID GO:0000049
description probable phenylalanine--trna ligase alpha subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34300: 61703-63366
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000326_050 0.0 - - Phenylalanyl-tRNA synthetase alpha chain isoform 2 [Theobroma cacao]
2 Hb_000094_330 0.1161465824 - - PREDICTED: COP9 signalosome complex subunit 4 [Jatropha curcas]
3 Hb_004897_020 0.1235772003 - - PREDICTED: (-)-germacrene D synthase-like [Populus euphratica]
4 Hb_000567_030 0.1361644689 - - hypothetical protein JCGZ_21550 [Jatropha curcas]
5 Hb_000054_100 0.1389053094 - - PREDICTED: metal tolerance protein C4 [Jatropha curcas]
6 Hb_004297_070 0.1422956951 - - hypothetical protein POPTR_0009s14820g [Populus trichocarpa]
7 Hb_002876_240 0.1445184306 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [Jatropha curcas]
8 Hb_002299_030 0.1464634802 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001814_070 0.1488443338 - - PREDICTED: uncharacterized protein LOC105650638 [Jatropha curcas]
10 Hb_000086_380 0.1529875802 - - PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Jatropha curcas]
11 Hb_002820_110 0.1543230276 - - PREDICTED: uncharacterized protein LOC105638918 [Jatropha curcas]
12 Hb_001922_170 0.1556096404 - - Plastidic pyruvate kinase beta subunit 1 isoform 2 [Theobroma cacao]
13 Hb_003266_050 0.1557514773 - - PREDICTED: small nuclear ribonucleoprotein Sm D1 [Amborella trichopoda]
14 Hb_006570_140 0.1558686145 - - PREDICTED: neurofilament heavy polypeptide-like [Jatropha curcas]
15 Hb_002524_010 0.1571542784 - - hypothetical protein POPTR_0006s20250g [Populus trichocarpa]
16 Hb_000927_020 0.1575544866 - - synaptosomal associated protein, putative [Ricinus communis]
17 Hb_001221_320 0.1587695771 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-1 isoform X1 [Jatropha curcas]
18 Hb_000157_090 0.1634199682 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
19 Hb_003688_130 0.1635606891 - - phosphoserine phosphatase, putative [Ricinus communis]
20 Hb_003922_010 0.1639922223 - - PREDICTED: probable phospholipid hydroperoxide glutathione peroxidase [Jatropha curcas]

Gene co-expression network

sample Hb_000326_050 Hb_000326_050 Hb_000094_330 Hb_000094_330 Hb_000326_050--Hb_000094_330 Hb_004897_020 Hb_004897_020 Hb_000326_050--Hb_004897_020 Hb_000567_030 Hb_000567_030 Hb_000326_050--Hb_000567_030 Hb_000054_100 Hb_000054_100 Hb_000326_050--Hb_000054_100 Hb_004297_070 Hb_004297_070 Hb_000326_050--Hb_004297_070 Hb_002876_240 Hb_002876_240 Hb_000326_050--Hb_002876_240 Hb_000094_330--Hb_002876_240 Hb_006570_140 Hb_006570_140 Hb_000094_330--Hb_006570_140 Hb_002820_050 Hb_002820_050 Hb_000094_330--Hb_002820_050 Hb_001922_170 Hb_001922_170 Hb_000094_330--Hb_001922_170 Hb_146673_010 Hb_146673_010 Hb_000094_330--Hb_146673_010 Hb_002820_110 Hb_002820_110 Hb_000094_330--Hb_002820_110 Hb_001579_230 Hb_001579_230 Hb_004897_020--Hb_001579_230 Hb_001105_010 Hb_001105_010 Hb_004897_020--Hb_001105_010 Hb_004897_020--Hb_000094_330 Hb_002205_210 Hb_002205_210 Hb_004897_020--Hb_002205_210 Hb_033834_030 Hb_033834_030 Hb_004897_020--Hb_033834_030 Hb_022132_050 Hb_022132_050 Hb_004897_020--Hb_022132_050 Hb_005056_060 Hb_005056_060 Hb_000567_030--Hb_005056_060 Hb_004108_080 Hb_004108_080 Hb_000567_030--Hb_004108_080 Hb_005389_150 Hb_005389_150 Hb_000567_030--Hb_005389_150 Hb_000086_380 Hb_000086_380 Hb_000567_030--Hb_000086_380 Hb_000003_080 Hb_000003_080 Hb_000567_030--Hb_000003_080 Hb_003266_050 Hb_003266_050 Hb_000567_030--Hb_003266_050 Hb_000815_040 Hb_000815_040 Hb_000054_100--Hb_000815_040 Hb_003001_120 Hb_003001_120 Hb_000054_100--Hb_003001_120 Hb_001936_080 Hb_001936_080 Hb_000054_100--Hb_001936_080 Hb_000163_160 Hb_000163_160 Hb_000054_100--Hb_000163_160 Hb_004310_130 Hb_004310_130 Hb_000054_100--Hb_004310_130 Hb_007778_030 Hb_007778_030 Hb_000054_100--Hb_007778_030 Hb_001377_150 Hb_001377_150 Hb_004297_070--Hb_001377_150 Hb_001278_110 Hb_001278_110 Hb_004297_070--Hb_001278_110 Hb_181288_010 Hb_181288_010 Hb_004297_070--Hb_181288_010 Hb_004297_070--Hb_003266_050 Hb_070986_010 Hb_070986_010 Hb_004297_070--Hb_070986_010 Hb_003874_020 Hb_003874_020 Hb_004297_070--Hb_003874_020 Hb_002876_240--Hb_002820_110 Hb_002876_240--Hb_002820_050 Hb_004453_130 Hb_004453_130 Hb_002876_240--Hb_004453_130 Hb_002876_240--Hb_146673_010 Hb_000529_030 Hb_000529_030 Hb_002876_240--Hb_000529_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.50923 0.331805 1.1669 0.64766 0.437536 1.68671
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.19963 1.1533 0.302723 0.795598 0.504607

CAGE analysis