Hb_000326_090

Information

Type -
Description -
Location Contig326: 116709-117524
Sequence    

Annotation

kegg
ID rcu:RCOM_0530530
description glycine-rich RNA-binding protein, putative
nr
ID XP_010254827.1
description PREDICTED: glycine-rich RNA-binding protein GRP1A-like [Nelumbo nucifera]
swissprot
ID P49310
description Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1
trembl
ID A0A067LCS1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10096 PE=4 SV=1
Gene Ontology
ID GO:0000166
description glycine-rich rna-binding protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34311: 116715-117832 , PASA_asmbl_34312: 116710-117832 , PASA_asmbl_34313: 116716-117832
cDNA
(Sanger)
(ID:Location)		 002_C05.ab1: 116715-117696 , 003_J05.ab1: 116716-117703 , 004_K12.ab1: 116697-117701 , 012_M09.ab1: 116716-117703 , 015_C14.ab1: 117509-117753 , 015_D13.ab1: 116720-117297 , 015_M11.ab1: 116718-117338 , 016_M01.ab1: 116716-117438 , 017_L15.ab1: 116710-117334 , 022_M18.ab1: 116716-117305 , 024_F22.ab1: 116711-117304 , 032_H04.ab1: 116731-117505 , 033_M18.ab1: 116867-117110 , 034_E15.ab1: 116697-117692 , 034_F04.ab1: 116697-117701 , 042_A17.ab1: 116697-117532 , 046_F05.ab1: 116716-117358 , 046_P06.ab1: 116716-117679 , 048_P15.ab1: 116715-117627 , 050_N15.ab1: 116716-117603 , 051_E24.ab1: 116716-117740 , 052_I19.ab1: 116716-117601

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000326_090 0.0 - - PREDICTED: glycine-rich RNA-binding protein GRP1A-like [Nelumbo nucifera]
2 Hb_000083_170 0.0772020491 - - PREDICTED: DNA-directed RNA polymerase V subunit 7-like [Populus euphratica]
3 Hb_002296_040 0.078887193 - - PREDICTED: DNA-directed RNA polymerase II subunit 4 [Jatropha curcas]
4 Hb_066768_010 0.0844343262 - - PREDICTED: outer envelope pore protein 16-3, chloroplastic/mitochondrial [Jatropha curcas]
5 Hb_005867_020 0.0883071388 - - PREDICTED: sm-like protein LSM8 [Jatropha curcas]
6 Hb_031089_040 0.0896498076 - - thioredoxin H-type 1 [Hevea brasiliensis]
7 Hb_001250_060 0.0952079132 - - PREDICTED: signal recognition particle receptor subunit beta-like [Jatropha curcas]
8 Hb_002260_150 0.0961699468 - - PREDICTED: uncharacterized protein LOC105647187 isoform X2 [Jatropha curcas]
9 Hb_001268_050 0.0973747711 - - translocon-associated protein, beta subunit precursor, putative [Ricinus communis]
10 Hb_021238_050 0.098064511 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000003_730 0.1012093839 - - DNA repair/transcription protein met18/mms19, putative [Ricinus communis]
12 Hb_002259_160 0.1016941206 - - hypothetical protein PSEUBRA_SCAF14g01508 [Pseudozyma brasiliensis GHG001]
13 Hb_172706_030 0.1028868617 - - PREDICTED: uncharacterized protein LOC105640907 [Jatropha curcas]
14 Hb_004784_020 0.1031292829 - - PREDICTED: uncharacterized protein LOC105636452 [Jatropha curcas]
15 Hb_007735_030 0.1037557808 - - Calcium-binding EF-hand family protein isoform 1 [Theobroma cacao]
16 Hb_001584_190 0.1057582433 - - clathrin coat adaptor ap3 medium chain, putative [Ricinus communis]
17 Hb_037887_010 0.1072024007 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
18 Hb_000707_030 0.1104542444 - - PREDICTED: probable proteasome inhibitor [Vitis vinifera]
19 Hb_003352_040 0.1104842883 - - PREDICTED: 26S proteasome regulatory subunit RPN13 [Jatropha curcas]
20 Hb_006573_020 0.1141786724 - - PREDICTED: 40S ribosomal protein S10-like [Jatropha curcas]

Gene co-expression network

sample Hb_000326_090 Hb_000326_090 Hb_000083_170 Hb_000083_170 Hb_000326_090--Hb_000083_170 Hb_002296_040 Hb_002296_040 Hb_000326_090--Hb_002296_040 Hb_066768_010 Hb_066768_010 Hb_000326_090--Hb_066768_010 Hb_005867_020 Hb_005867_020 Hb_000326_090--Hb_005867_020 Hb_031089_040 Hb_031089_040 Hb_000326_090--Hb_031089_040 Hb_001250_060 Hb_001250_060 Hb_000326_090--Hb_001250_060 Hb_037887_010 Hb_037887_010 Hb_000083_170--Hb_037887_010 Hb_000083_170--Hb_005867_020 Hb_000162_260 Hb_000162_260 Hb_000083_170--Hb_000162_260 Hb_012653_040 Hb_012653_040 Hb_000083_170--Hb_012653_040 Hb_002259_160 Hb_002259_160 Hb_000083_170--Hb_002259_160 Hb_002596_040 Hb_002596_040 Hb_002296_040--Hb_002596_040 Hb_002662_030 Hb_002662_030 Hb_002296_040--Hb_002662_030 Hb_002260_150 Hb_002260_150 Hb_002296_040--Hb_002260_150 Hb_000707_030 Hb_000707_030 Hb_002296_040--Hb_000707_030 Hb_007735_030 Hb_007735_030 Hb_002296_040--Hb_007735_030 Hb_004784_020 Hb_004784_020 Hb_066768_010--Hb_004784_020 Hb_066768_010--Hb_001250_060 Hb_066768_010--Hb_031089_040 Hb_066768_010--Hb_000083_170 Hb_066768_010--Hb_005867_020 Hb_000479_190 Hb_000479_190 Hb_005867_020--Hb_000479_190 Hb_003502_090 Hb_003502_090 Hb_005867_020--Hb_003502_090 Hb_000656_170 Hb_000656_170 Hb_005867_020--Hb_000656_170 Hb_002207_110 Hb_002207_110 Hb_005867_020--Hb_002207_110 Hb_031089_040--Hb_002207_110 Hb_031089_040--Hb_004784_020 Hb_031089_040--Hb_002296_040 Hb_004502_020 Hb_004502_020 Hb_031089_040--Hb_004502_020 Hb_000003_730 Hb_000003_730 Hb_031089_040--Hb_000003_730 Hb_003929_270 Hb_003929_270 Hb_001250_060--Hb_003929_270 Hb_129672_010 Hb_129672_010 Hb_001250_060--Hb_129672_010 Hb_000735_110 Hb_000735_110 Hb_001250_060--Hb_000735_110 Hb_000167_080 Hb_000167_080 Hb_001250_060--Hb_000167_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
622.341 292.023 416.957 2002.8 737.212 2099.6
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1555.5 2465.06 1185.13 1001.19 665.612

CAGE analysis