Hb_000326_120

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig326: 167004-167267
Sequence    

Annotation

kegg
ID rcu:RCOM_1675610
description transcription factor, putative
nr
ID XP_002509493.1
description transcription factor, putative [Ricinus communis]
swissprot
ID Q6P2Y3
description DnaJ homolog subfamily C member 2 OS=Xenopus tropicalis GN=dnajc2 PE=2 SV=2
trembl
ID B9RBF9
description Transcription factor, putative OS=Ricinus communis GN=RCOM_1675610 PE=4 SV=1
Gene Ontology
ID GO:0003677
description protein radialis-like 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34316: 166219-167313
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000326_120 0.0 transcription factor TF Family: MYB-related transcription factor, putative [Ricinus communis]
2 Hb_024723_010 0.0609705692 - - PREDICTED: leucine-rich repeat receptor protein kinase EMS1-like [Jatropha curcas]
3 Hb_000111_490 0.0628994397 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000485_100 0.0697735961 - - PREDICTED: putative UPF0481 protein At3g02645 [Populus euphratica]
5 Hb_001278_120 0.0697782333 - - PREDICTED: reticulon-like protein B14 [Jatropha curcas]
6 Hb_000343_070 0.0735244858 - - hypothetical protein JCGZ_06265 [Jatropha curcas]
7 Hb_002391_010 0.074939667 - - PREDICTED: probable acyl-activating enzyme 1, peroxisomal [Jatropha curcas]
8 Hb_056506_040 0.077922319 - - -
9 Hb_004943_020 0.0793692901 - - cationic amino acid transporter, putative [Ricinus communis]
10 Hb_001926_080 0.0806559616 - - PREDICTED: uncharacterized protein LOC103454919 [Malus domestica]
11 Hb_000318_310 0.0808744435 - - hypothetical protein POPTR_0009s11190g [Populus trichocarpa]
12 Hb_004459_010 0.0839742182 - - PREDICTED: phospholipase A1-IIgamma-like [Jatropha curcas]
13 Hb_001981_050 0.0846630593 - - PREDICTED: aldehyde dehydrogenase family 3 member F1-like [Jatropha curcas]
14 Hb_000707_090 0.0869051542 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6-like [Jatropha curcas]
15 Hb_068804_190 0.0906552067 - - kinase, putative [Ricinus communis]
16 Hb_003855_060 0.093223661 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
17 Hb_185811_010 0.0932905095 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
18 Hb_005532_080 0.0934651367 - - PREDICTED: heparanase-like protein 2 [Jatropha curcas]
19 Hb_007904_150 0.0937080214 - - PREDICTED: probable pectate lyase 5 [Populus euphratica]
20 Hb_006895_010 0.0938015751 - - PREDICTED: secologanin synthase-like [Citrus sinensis]

Gene co-expression network

sample Hb_000326_120 Hb_000326_120 Hb_024723_010 Hb_024723_010 Hb_000326_120--Hb_024723_010 Hb_000111_490 Hb_000111_490 Hb_000326_120--Hb_000111_490 Hb_000485_100 Hb_000485_100 Hb_000326_120--Hb_000485_100 Hb_001278_120 Hb_001278_120 Hb_000326_120--Hb_001278_120 Hb_000343_070 Hb_000343_070 Hb_000326_120--Hb_000343_070 Hb_002391_010 Hb_002391_010 Hb_000326_120--Hb_002391_010 Hb_024723_010--Hb_000111_490 Hb_024723_010--Hb_000485_100 Hb_024723_010--Hb_002391_010 Hb_056506_040 Hb_056506_040 Hb_024723_010--Hb_056506_040 Hb_001926_080 Hb_001926_080 Hb_024723_010--Hb_001926_080 Hb_000111_490--Hb_056506_040 Hb_000111_490--Hb_000485_100 Hb_000111_490--Hb_002391_010 Hb_068804_190 Hb_068804_190 Hb_000111_490--Hb_068804_190 Hb_000111_490--Hb_001926_080 Hb_000485_100--Hb_002391_010 Hb_000485_100--Hb_001926_080 Hb_000224_190 Hb_000224_190 Hb_000485_100--Hb_000224_190 Hb_006895_010 Hb_006895_010 Hb_000485_100--Hb_006895_010 Hb_001278_120--Hb_000343_070 Hb_004943_020 Hb_004943_020 Hb_001278_120--Hb_004943_020 Hb_004459_010 Hb_004459_010 Hb_001278_120--Hb_004459_010 Hb_128986_010 Hb_128986_010 Hb_001278_120--Hb_128986_010 Hb_003855_060 Hb_003855_060 Hb_001278_120--Hb_003855_060 Hb_000343_070--Hb_004943_020 Hb_005269_060 Hb_005269_060 Hb_000343_070--Hb_005269_060 Hb_049955_010 Hb_049955_010 Hb_000343_070--Hb_049955_010 Hb_010172_040 Hb_010172_040 Hb_000343_070--Hb_010172_040 Hb_000707_090 Hb_000707_090 Hb_000343_070--Hb_000707_090 Hb_002391_010--Hb_001926_080 Hb_002391_010--Hb_000224_190 Hb_001345_050 Hb_001345_050 Hb_002391_010--Hb_001345_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.284816 50.2033 122.617 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.530128 0.838832 0 0.392405 101.254

CAGE analysis