Hb_000327_120

Information

Type -
Description -
Location Contig327: 125958-131707
Sequence    

Annotation

kegg
ID rcu:RCOM_1071630
description FGFR1 oncogene partner, putative
nr
ID XP_002523933.1
description FGFR1 oncogene partner, putative [Ricinus communis]
swissprot
ID Q9FQ24
description Protein TONNEAU 1b OS=Arabidopsis thaliana GN=TON1B PE=1 SV=1
trembl
ID B9SD64
description FGFR1 oncogene partner, putative OS=Ricinus communis GN=RCOM_1071630 PE=4 SV=1
Gene Ontology
ID GO:0005515
description protein tonneau 1a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34370: 119027-125287 , PASA_asmbl_34371: 123323-125287 , PASA_asmbl_34374: 125810-131675 , PASA_asmbl_34375: 129436-129612
cDNA
(Sanger)
(ID:Location)		 018_C08.ab1: 125948-129982 , 033_J20.ab1: 125978-131346

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000327_120 0.0 - - FGFR1 oncogene partner, putative [Ricinus communis]
2 Hb_002685_140 0.0478061185 - - PREDICTED: membrin-11 [Jatropha curcas]
3 Hb_007951_060 0.0533856437 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
4 Hb_001635_170 0.057395842 - - hypothetical protein JCGZ_24811 [Jatropha curcas]
5 Hb_054865_100 0.0591289067 - - PREDICTED: probable protein S-acyltransferase 12 isoform X1 [Jatropha curcas]
6 Hb_001595_030 0.059204593 - - PREDICTED: nuclear inhibitor of protein phosphatase 1 isoform X1 [Jatropha curcas]
7 Hb_006185_050 0.0597246933 - - hypothetical protein POPTR_0001s20590g [Populus trichocarpa]
8 Hb_000926_280 0.0603288004 - - ubiquitin-activating enzyme E1, putative [Ricinus communis]
9 Hb_015746_010 0.0627329644 - - PREDICTED: triacylglycerol lipase 2-like [Jatropha curcas]
10 Hb_001305_010 0.0640497654 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplastic [Jatropha curcas]
11 Hb_000645_050 0.0656059887 - - peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein [Populus trichocarpa]
12 Hb_001439_150 0.0668502329 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15340, mitochondrial [Jatropha curcas]
13 Hb_003417_020 0.0692517027 - - PREDICTED: 50S ribosomal protein L13, chloroplastic [Jatropha curcas]
14 Hb_066182_010 0.0693054084 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
15 Hb_011689_080 0.0693251384 - - PREDICTED: uncharacterized protein LOC105631867 [Jatropha curcas]
16 Hb_000661_250 0.0702326275 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
17 Hb_007576_040 0.0703066492 - - PREDICTED: uncharacterized protein LOC105169221 [Sesamum indicum]
18 Hb_096563_010 0.0715473479 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Prunus mume]
19 Hb_001623_420 0.0716728436 - - nucleotide binding protein, putative [Ricinus communis]
20 Hb_000392_300 0.0726746855 - - PREDICTED: RINT1-like protein MAG2 [Jatropha curcas]

Gene co-expression network

sample Hb_000327_120 Hb_000327_120 Hb_002685_140 Hb_002685_140 Hb_000327_120--Hb_002685_140 Hb_007951_060 Hb_007951_060 Hb_000327_120--Hb_007951_060 Hb_001635_170 Hb_001635_170 Hb_000327_120--Hb_001635_170 Hb_054865_100 Hb_054865_100 Hb_000327_120--Hb_054865_100 Hb_001595_030 Hb_001595_030 Hb_000327_120--Hb_001595_030 Hb_006185_050 Hb_006185_050 Hb_000327_120--Hb_006185_050 Hb_001439_150 Hb_001439_150 Hb_002685_140--Hb_001439_150 Hb_011689_080 Hb_011689_080 Hb_002685_140--Hb_011689_080 Hb_001623_420 Hb_001623_420 Hb_002685_140--Hb_001623_420 Hb_002685_140--Hb_001635_170 Hb_007576_040 Hb_007576_040 Hb_002685_140--Hb_007576_040 Hb_001305_010 Hb_001305_010 Hb_007951_060--Hb_001305_010 Hb_000926_280 Hb_000926_280 Hb_007951_060--Hb_000926_280 Hb_007951_060--Hb_001439_150 Hb_003417_020 Hb_003417_020 Hb_007951_060--Hb_003417_020 Hb_007951_060--Hb_007576_040 Hb_010661_030 Hb_010661_030 Hb_001635_170--Hb_010661_030 Hb_008803_090 Hb_008803_090 Hb_001635_170--Hb_008803_090 Hb_033153_050 Hb_033153_050 Hb_001635_170--Hb_033153_050 Hb_000661_250 Hb_000661_250 Hb_001635_170--Hb_000661_250 Hb_022250_030 Hb_022250_030 Hb_001635_170--Hb_022250_030 Hb_066182_010 Hb_066182_010 Hb_054865_100--Hb_066182_010 Hb_005276_210 Hb_005276_210 Hb_054865_100--Hb_005276_210 Hb_006620_020 Hb_006620_020 Hb_054865_100--Hb_006620_020 Hb_000174_110 Hb_000174_110 Hb_054865_100--Hb_000174_110 Hb_000645_050 Hb_000645_050 Hb_054865_100--Hb_000645_050 Hb_000879_200 Hb_000879_200 Hb_001595_030--Hb_000879_200 Hb_036790_100 Hb_036790_100 Hb_001595_030--Hb_036790_100 Hb_000038_170 Hb_000038_170 Hb_001595_030--Hb_000038_170 Hb_002603_120 Hb_002603_120 Hb_001595_030--Hb_002603_120 Hb_001595_030--Hb_006185_050 Hb_006185_050--Hb_001305_010 Hb_000392_300 Hb_000392_300 Hb_006185_050--Hb_000392_300 Hb_000089_220 Hb_000089_220 Hb_006185_050--Hb_000089_220 Hb_003175_010 Hb_003175_010 Hb_006185_050--Hb_003175_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
163.685 74.3409 79.5671 66.0934 163.478 136.808
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
140.249 134.124 126.491 72.3003 45.9833

CAGE analysis