Hb_000327_180

Information

Type -
Description -
Location Contig327: 172540-182328
Sequence    

Annotation

kegg
ID rcu:RCOM_0744140
description run and tbc1 domain containing 3, plant, putative
nr
ID XP_012073566.1
description PREDICTED: TBC1 domain family member 10B-like isoform X1 [Jatropha curcas]
swissprot
ID A3KGB4
description TBC1 domain family member 8B OS=Mus musculus GN=Tbc1d8b PE=2 SV=1
trembl
ID A0A067LCK3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06648 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34378: 172668-178273
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000327_180 0.0 - - PREDICTED: TBC1 domain family member 10B-like isoform X1 [Jatropha curcas]
2 Hb_003847_030 0.0633479972 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Jatropha curcas]
3 Hb_002799_070 0.0708573622 - - PREDICTED: RNA-binding protein 39 [Jatropha curcas]
4 Hb_001195_200 0.0734698006 - - PREDICTED: uncharacterized protein LOC105633802 [Jatropha curcas]
5 Hb_005054_110 0.0750846105 - - PREDICTED: adenylosuccinate lyase-like [Jatropha curcas]
6 Hb_003376_250 0.0764241132 - - Transducin/WD40 repeat-like superfamily protein [Theobroma cacao]
7 Hb_000603_080 0.0771037614 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33170 [Vitis vinifera]
8 Hb_000917_230 0.0772977745 - - PREDICTED: coiled-coil domain-containing protein 130-like [Jatropha curcas]
9 Hb_001352_020 0.0783036586 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 8, mitochondrial-like [Jatropha curcas]
10 Hb_011386_010 0.0821261284 - - mitochondrial carrier protein, putative [Ricinus communis]
11 Hb_001123_040 0.082478808 - - PREDICTED: R3H domain-containing protein 1-like [Jatropha curcas]
12 Hb_000049_210 0.0829225772 - - PREDICTED: uncharacterized protein LOC105644460 [Jatropha curcas]
13 Hb_000352_310 0.084096744 - - hypothetical protein CISIN_1g0017891mg, partial [Citrus sinensis]
14 Hb_007416_120 0.0848194089 - - arginine/serine-rich splicing factor, putative [Ricinus communis]
15 Hb_003465_030 0.0862880926 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000116_260 0.0876246982 - - PREDICTED: uncharacterized protein LOC105628572 [Jatropha curcas]
17 Hb_000095_080 0.0900180101 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 7 [Jatropha curcas]
18 Hb_000120_080 0.0903048056 - - PREDICTED: probable pyridoxal 5'-phosphate synthase subunit PDX1 [Jatropha curcas]
19 Hb_001304_110 0.0903422511 transcription factor TF Family: WRKY WRKY protein [Hevea brasiliensis]
20 Hb_004480_100 0.0908961202 - - PREDICTED: calcium homeostasis endoplasmic reticulum protein [Jatropha curcas]

Gene co-expression network

sample Hb_000327_180 Hb_000327_180 Hb_003847_030 Hb_003847_030 Hb_000327_180--Hb_003847_030 Hb_002799_070 Hb_002799_070 Hb_000327_180--Hb_002799_070 Hb_001195_200 Hb_001195_200 Hb_000327_180--Hb_001195_200 Hb_005054_110 Hb_005054_110 Hb_000327_180--Hb_005054_110 Hb_003376_250 Hb_003376_250 Hb_000327_180--Hb_003376_250 Hb_000603_080 Hb_000603_080 Hb_000327_180--Hb_000603_080 Hb_000049_210 Hb_000049_210 Hb_003847_030--Hb_000049_210 Hb_000614_250 Hb_000614_250 Hb_003847_030--Hb_000614_250 Hb_003847_030--Hb_005054_110 Hb_000497_300 Hb_000497_300 Hb_003847_030--Hb_000497_300 Hb_001014_030 Hb_001014_030 Hb_003847_030--Hb_001014_030 Hb_000165_160 Hb_000165_160 Hb_002799_070--Hb_000165_160 Hb_001489_080 Hb_001489_080 Hb_002799_070--Hb_001489_080 Hb_001541_120 Hb_001541_120 Hb_002799_070--Hb_001541_120 Hb_006420_080 Hb_006420_080 Hb_002799_070--Hb_006420_080 Hb_001123_040 Hb_001123_040 Hb_002799_070--Hb_001123_040 Hb_000982_080 Hb_000982_080 Hb_001195_200--Hb_000982_080 Hb_003768_030 Hb_003768_030 Hb_001195_200--Hb_003768_030 Hb_001489_090 Hb_001489_090 Hb_001195_200--Hb_001489_090 Hb_001195_200--Hb_003376_250 Hb_000258_260 Hb_000258_260 Hb_001195_200--Hb_000258_260 Hb_011386_010 Hb_011386_010 Hb_005054_110--Hb_011386_010 Hb_005054_110--Hb_000049_210 Hb_000260_350 Hb_000260_350 Hb_005054_110--Hb_000260_350 Hb_149985_010 Hb_149985_010 Hb_005054_110--Hb_149985_010 Hb_019863_070 Hb_019863_070 Hb_005054_110--Hb_019863_070 Hb_001304_110 Hb_001304_110 Hb_005054_110--Hb_001304_110 Hb_003376_250--Hb_000982_080 Hb_011344_190 Hb_011344_190 Hb_003376_250--Hb_011344_190 Hb_005488_200 Hb_005488_200 Hb_003376_250--Hb_005488_200 Hb_007416_060 Hb_007416_060 Hb_003376_250--Hb_007416_060 Hb_009803_050 Hb_009803_050 Hb_000603_080--Hb_009803_050 Hb_001314_070 Hb_001314_070 Hb_000603_080--Hb_001314_070 Hb_000603_080--Hb_005488_200 Hb_001504_330 Hb_001504_330 Hb_000603_080--Hb_001504_330 Hb_000603_080--Hb_000982_080 Hb_003994_260 Hb_003994_260 Hb_000603_080--Hb_003994_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.65161 6.31903 4.69201 6.52695 3.89973 5.88307
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.59923 8.75718 10.141 9.49263 9.33803

CAGE analysis