Hb_000327_190

Information

Type -
Description -
Location Contig327: 198797-202284
Sequence    

Annotation

kegg
ID rcu:RCOM_0744550
description cdp-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, putative (EC:2.7.8.5)
nr
ID XP_012073555.1
description PREDICTED: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2-like [Jatropha curcas]
swissprot
ID O80952
description CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1, chloroplastic OS=Arabidopsis thaliana GN=PGPS1 PE=1 SV=1
trembl
ID A0A067LCC3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06647 PE=3 SV=1
Gene Ontology
ID GO:0016020
description cdp-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34379: 198919-202589
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000327_190 0.0 - - PREDICTED: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2-like [Jatropha curcas]
2 Hb_003599_040 0.0584704405 - - unnamed protein product [Vitis vinifera]
3 Hb_000926_250 0.0640797874 - - hypothetical protein POPTR_0011s08930g [Populus trichocarpa]
4 Hb_002284_240 0.0655681641 - - PREDICTED: coiled-coil domain-containing protein 115 isoform X3 [Jatropha curcas]
5 Hb_002477_070 0.0722257419 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
6 Hb_033834_040 0.0763788495 - - conserved hypothetical protein [Ricinus communis]
7 Hb_008900_010 0.0780986708 - - PREDICTED: uncharacterized protein LOC105773666 [Gossypium raimondii]
8 Hb_000103_090 0.0787279033 - - PREDICTED: protein RDM1 [Jatropha curcas]
9 Hb_159809_020 0.0803050427 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_063090_010 0.0811381252 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
11 Hb_156635_030 0.0821241557 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial isoform X1 [Nelumbo nucifera]
12 Hb_006400_030 0.0829741246 - - hypothetical protein OsI_01237 [Oryza sativa Indica Group]
13 Hb_000205_160 0.0835792947 - - Peroxisome biogenesis protein 12 [Morus notabilis]
14 Hb_001006_190 0.0845901814 - - PREDICTED: uncharacterized protein LOC105634201 [Jatropha curcas]
15 Hb_002214_040 0.0849681816 - - PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Jatropha curcas]
16 Hb_002685_190 0.0873901154 transcription factor TF Family: SET PREDICTED: probable zinc metalloprotease EGY1, chloroplastic [Jatropha curcas]
17 Hb_000007_100 0.0875697602 - - PREDICTED: uncharacterized protein LOC105640717 [Jatropha curcas]
18 Hb_000174_090 0.0876492395 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
19 Hb_015807_040 0.0876753981 - - PREDICTED: polycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM [Jatropha curcas]
20 Hb_172632_090 0.0895795274 - - ribosomal pseudouridine synthase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000327_190 Hb_000327_190 Hb_003599_040 Hb_003599_040 Hb_000327_190--Hb_003599_040 Hb_000926_250 Hb_000926_250 Hb_000327_190--Hb_000926_250 Hb_002284_240 Hb_002284_240 Hb_000327_190--Hb_002284_240 Hb_002477_070 Hb_002477_070 Hb_000327_190--Hb_002477_070 Hb_033834_040 Hb_033834_040 Hb_000327_190--Hb_033834_040 Hb_008900_010 Hb_008900_010 Hb_000327_190--Hb_008900_010 Hb_003599_040--Hb_002284_240 Hb_159809_020 Hb_159809_020 Hb_003599_040--Hb_159809_020 Hb_000926_300 Hb_000926_300 Hb_003599_040--Hb_000926_300 Hb_002685_190 Hb_002685_190 Hb_003599_040--Hb_002685_190 Hb_000007_100 Hb_000007_100 Hb_003599_040--Hb_000007_100 Hb_000926_250--Hb_000007_100 Hb_000926_250--Hb_033834_040 Hb_001604_080 Hb_001604_080 Hb_000926_250--Hb_001604_080 Hb_002226_070 Hb_002226_070 Hb_000926_250--Hb_002226_070 Hb_000926_250--Hb_002284_240 Hb_063716_050 Hb_063716_050 Hb_000926_250--Hb_063716_050 Hb_002284_240--Hb_159809_020 Hb_002284_240--Hb_000007_100 Hb_000020_060 Hb_000020_060 Hb_002284_240--Hb_000020_060 Hb_002214_040 Hb_002214_040 Hb_002477_070--Hb_002214_040 Hb_009838_080 Hb_009838_080 Hb_002477_070--Hb_009838_080 Hb_002006_020 Hb_002006_020 Hb_002477_070--Hb_002006_020 Hb_000529_190 Hb_000529_190 Hb_002477_070--Hb_000529_190 Hb_008648_010 Hb_008648_010 Hb_002477_070--Hb_008648_010 Hb_000059_370 Hb_000059_370 Hb_002477_070--Hb_000059_370 Hb_033834_040--Hb_002226_070 Hb_000103_090 Hb_000103_090 Hb_033834_040--Hb_000103_090 Hb_004032_010 Hb_004032_010 Hb_033834_040--Hb_004032_010 Hb_002183_090 Hb_002183_090 Hb_033834_040--Hb_002183_090 Hb_033834_040--Hb_159809_020 Hb_001758_100 Hb_001758_100 Hb_008900_010--Hb_001758_100 Hb_000120_470 Hb_000120_470 Hb_008900_010--Hb_000120_470 Hb_000504_140 Hb_000504_140 Hb_008900_010--Hb_000504_140 Hb_008900_010--Hb_002284_240 Hb_000146_070 Hb_000146_070 Hb_008900_010--Hb_000146_070 Hb_003918_010 Hb_003918_010 Hb_008900_010--Hb_003918_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.769305 0.372229 0.530214 0.50049 1.21117 1.46952
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.71698 1.82325 1.12777 1.06947 0.48781

CAGE analysis