Hb_000327_220

Information

Type -
Description -
Location Contig327: 211427-217486
Sequence    

Annotation

kegg
ID pop:POPTR_0008s04670g
description POPTRDRAFT_563814; serine/threonine protein phosphatase 2C
nr
ID XP_012073506.1
description PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]
swissprot
ID Q9LHJ9
description Probable protein phosphatase 2C 38 OS=Arabidopsis thaliana GN=At3g12620 PE=2 SV=1
trembl
ID A0A067LCK0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06643 PE=3 SV=1
Gene Ontology
ID GO:0004722
description probable protein phosphatase 2c 38 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000327_220 0.0 - - PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]
2 Hb_002756_020 0.0967792414 transcription factor TF Family: HB bel1 homeotic protein, putative [Ricinus communis]
3 Hb_011030_020 0.1040293681 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090 [Jatropha curcas]
4 Hb_001159_080 0.1059794 - - hypothetical protein JCGZ_20745 [Jatropha curcas]
5 Hb_005224_010 0.1158638613 - - glycine-rich protein [Bruguiera gymnorhiza]
6 Hb_003551_050 0.1169050793 - - PREDICTED: mitochondrial fission 1 protein A [Jatropha curcas]
7 Hb_000789_220 0.1179374193 - - phosphofructokinase [Hevea brasiliensis]
8 Hb_004410_100 0.1185976166 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 21 [Jatropha curcas]
9 Hb_000016_190 0.1218899288 - - ABC transporter B family member 28 [Glycine soja]
10 Hb_004785_140 0.1242300894 - - PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X2 [Jatropha curcas]
11 Hb_005188_090 0.1263897266 - - PREDICTED: phosphatidylinositol 4-kinase gamma 7-like [Jatropha curcas]
12 Hb_003581_260 0.1291564429 - - PREDICTED: vacuolar protein sorting-associated protein 29-like [Jatropha curcas]
13 Hb_001314_020 0.1295759498 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like isoform X1 [Jatropha curcas]
14 Hb_000236_140 0.1304893958 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like [Jatropha curcas]
15 Hb_012799_100 0.130562664 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like [Jatropha curcas]
16 Hb_004128_180 0.1313347534 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_002239_060 0.13391373 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
18 Hb_001811_030 0.1341253651 - - Beta-ureidopropionase, putative [Ricinus communis]
19 Hb_093458_050 0.1361530328 - - glutathione reductase [Hevea brasiliensis]
20 Hb_002205_130 0.1363471747 - - hypothetical protein B456_008G176100 [Gossypium raimondii]

Gene co-expression network

sample Hb_000327_220 Hb_000327_220 Hb_002756_020 Hb_002756_020 Hb_000327_220--Hb_002756_020 Hb_011030_020 Hb_011030_020 Hb_000327_220--Hb_011030_020 Hb_001159_080 Hb_001159_080 Hb_000327_220--Hb_001159_080 Hb_005224_010 Hb_005224_010 Hb_000327_220--Hb_005224_010 Hb_003551_050 Hb_003551_050 Hb_000327_220--Hb_003551_050 Hb_000789_220 Hb_000789_220 Hb_000327_220--Hb_000789_220 Hb_004429_070 Hb_004429_070 Hb_002756_020--Hb_004429_070 Hb_002290_040 Hb_002290_040 Hb_002756_020--Hb_002290_040 Hb_006816_450 Hb_006816_450 Hb_002756_020--Hb_006816_450 Hb_005614_050 Hb_005614_050 Hb_002756_020--Hb_005614_050 Hb_002756_020--Hb_003551_050 Hb_005162_070 Hb_005162_070 Hb_011030_020--Hb_005162_070 Hb_001189_050 Hb_001189_050 Hb_011030_020--Hb_001189_050 Hb_010608_050 Hb_010608_050 Hb_011030_020--Hb_010608_050 Hb_002205_130 Hb_002205_130 Hb_011030_020--Hb_002205_130 Hb_008695_100 Hb_008695_100 Hb_011030_020--Hb_008695_100 Hb_000617_150 Hb_000617_150 Hb_011030_020--Hb_000617_150 Hb_001096_110 Hb_001096_110 Hb_001159_080--Hb_001096_110 Hb_003581_260 Hb_003581_260 Hb_001159_080--Hb_003581_260 Hb_000141_020 Hb_000141_020 Hb_001159_080--Hb_000141_020 Hb_000125_030 Hb_000125_030 Hb_001159_080--Hb_000125_030 Hb_000099_130 Hb_000099_130 Hb_001159_080--Hb_000099_130 Hb_002239_060 Hb_002239_060 Hb_005224_010--Hb_002239_060 Hb_005224_010--Hb_001159_080 Hb_005489_100 Hb_005489_100 Hb_005224_010--Hb_005489_100 Hb_003972_080 Hb_003972_080 Hb_005224_010--Hb_003972_080 Hb_009314_010 Hb_009314_010 Hb_005224_010--Hb_009314_010 Hb_093458_050 Hb_093458_050 Hb_003551_050--Hb_093458_050 Hb_011953_020 Hb_011953_020 Hb_003551_050--Hb_011953_020 Hb_000976_360 Hb_000976_360 Hb_003551_050--Hb_000976_360 Hb_031862_110 Hb_031862_110 Hb_003551_050--Hb_031862_110 Hb_002603_160 Hb_002603_160 Hb_003551_050--Hb_002603_160 Hb_000753_130 Hb_000753_130 Hb_003551_050--Hb_000753_130 Hb_004705_120 Hb_004705_120 Hb_000789_220--Hb_004705_120 Hb_001314_020 Hb_001314_020 Hb_000789_220--Hb_001314_020 Hb_010174_060 Hb_010174_060 Hb_000789_220--Hb_010174_060 Hb_056753_010 Hb_056753_010 Hb_000789_220--Hb_056753_010 Hb_003687_240 Hb_003687_240 Hb_000789_220--Hb_003687_240 Hb_008616_070 Hb_008616_070 Hb_000789_220--Hb_008616_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.2279 3.38046 1.95814 3.00996 3.90611 3.62408
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.9961 9.19393 23.716 5.45148 2.20881

CAGE analysis