Hb_000327_230

Information

Type -
Description -
Location Contig327: 223047-235821
Sequence    

Annotation

kegg
ID pop:POPTR_0010s22170g
description POPTRDRAFT_227753; hypothetical protein
nr
ID XP_012073485.1
description PREDICTED: nitrilase-like protein 2 isoform X1 [Jatropha curcas]
swissprot
ID Q94JV5
description Nitrilase-like protein 2 OS=Arabidopsis thaliana GN=NLP2 PE=2 SV=1
trembl
ID B9HTZ5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s22170g PE=4 SV=2
Gene Ontology
ID GO:0016810
description nitrilase-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34384: 223189-224031
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000327_230 0.0 - - PREDICTED: nitrilase-like protein 2 isoform X1 [Jatropha curcas]
2 Hb_001863_430 0.0725176013 - - PREDICTED: probable protein phosphatase 2C 9 [Populus euphratica]
3 Hb_000136_260 0.0738670281 - - 40S ribosomal protein S5A [Hevea brasiliensis]
4 Hb_000001_060 0.0799706364 - - PREDICTED: N(6)-adenine-specific DNA methyltransferase 2 [Jatropha curcas]
5 Hb_000099_150 0.0836527946 - - PREDICTED: calcium-dependent protein kinase 3 [Jatropha curcas]
6 Hb_000005_090 0.0843057787 - - hypothetical protein CICLE_v10029644mg [Citrus clementina]
7 Hb_001016_150 0.0844851056 - - Rop1 [Hevea brasiliensis]
8 Hb_002078_140 0.0849794283 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
9 Hb_000155_160 0.0857562478 - - hypothetical protein POPTR_0011s05880g [Populus trichocarpa]
10 Hb_017987_050 0.0861384058 - - PREDICTED: branched-chain-amino-acid aminotransferase 5, chloroplastic-like [Jatropha curcas]
11 Hb_000327_380 0.0898478493 - - hypothetical protein JCGZ_06621 [Jatropha curcas]
12 Hb_001691_140 0.0932013378 - - mitochondrial 50S ribosomal protein L21 [Hevea brasiliensis]
13 Hb_001123_060 0.0933130956 - - PREDICTED: ALBINO3-like protein 2, chloroplastic [Jatropha curcas]
14 Hb_002105_100 0.0942899618 - - protein with unknown function [Ricinus communis]
15 Hb_002171_060 0.0949938334 - - conserved hypothetical protein [Ricinus communis]
16 Hb_124953_020 0.0952518741 - - Mitochondrial import inner membrane translocase subunit Tim13, putative [Ricinus communis]
17 Hb_011671_100 0.0957943426 - - 60S ribosomal protein L15 [Populus trichocarpa]
18 Hb_000045_300 0.0960166321 - - PREDICTED: peroxisomal nicotinamide adenine dinucleotide carrier isoform X1 [Jatropha curcas]
19 Hb_000331_470 0.0973412614 - - PREDICTED: uncharacterized protein LOC105136689 [Populus euphratica]
20 Hb_007894_060 0.0977017904 - - PREDICTED: ubiquitin thioesterase OTU1 [Jatropha curcas]

Gene co-expression network

sample Hb_000327_230 Hb_000327_230 Hb_001863_430 Hb_001863_430 Hb_000327_230--Hb_001863_430 Hb_000136_260 Hb_000136_260 Hb_000327_230--Hb_000136_260 Hb_000001_060 Hb_000001_060 Hb_000327_230--Hb_000001_060 Hb_000099_150 Hb_000099_150 Hb_000327_230--Hb_000099_150 Hb_000005_090 Hb_000005_090 Hb_000327_230--Hb_000005_090 Hb_001016_150 Hb_001016_150 Hb_000327_230--Hb_001016_150 Hb_001863_430--Hb_001016_150 Hb_000506_070 Hb_000506_070 Hb_001863_430--Hb_000506_070 Hb_002078_140 Hb_002078_140 Hb_001863_430--Hb_002078_140 Hb_002811_170 Hb_002811_170 Hb_001863_430--Hb_002811_170 Hb_001691_140 Hb_001691_140 Hb_001863_430--Hb_001691_140 Hb_000538_120 Hb_000538_120 Hb_000136_260--Hb_000538_120 Hb_000136_260--Hb_002078_140 Hb_000136_260--Hb_000099_150 Hb_000419_020 Hb_000419_020 Hb_000136_260--Hb_000419_020 Hb_000136_350 Hb_000136_350 Hb_000136_260--Hb_000136_350 Hb_004109_340 Hb_004109_340 Hb_000136_260--Hb_004109_340 Hb_004143_150 Hb_004143_150 Hb_000001_060--Hb_004143_150 Hb_004899_370 Hb_004899_370 Hb_000001_060--Hb_004899_370 Hb_001476_080 Hb_001476_080 Hb_000001_060--Hb_001476_080 Hb_003151_040 Hb_003151_040 Hb_000001_060--Hb_003151_040 Hb_000001_060--Hb_000005_090 Hb_001766_060 Hb_001766_060 Hb_000001_060--Hb_001766_060 Hb_000099_150--Hb_001691_140 Hb_002027_350 Hb_002027_350 Hb_000099_150--Hb_002027_350 Hb_017987_050 Hb_017987_050 Hb_000099_150--Hb_017987_050 Hb_000099_150--Hb_002078_140 Hb_004108_070 Hb_004108_070 Hb_000005_090--Hb_004108_070 Hb_002105_100 Hb_002105_100 Hb_000005_090--Hb_002105_100 Hb_006693_020 Hb_006693_020 Hb_000005_090--Hb_006693_020 Hb_004127_020 Hb_004127_020 Hb_000005_090--Hb_004127_020 Hb_000005_090--Hb_004899_370 Hb_124953_020 Hb_124953_020 Hb_001016_150--Hb_124953_020 Hb_001016_150--Hb_002078_140 Hb_001341_150 Hb_001341_150 Hb_001016_150--Hb_001341_150 Hb_001016_150--Hb_002811_170 Hb_001016_150--Hb_000506_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.25138 3.25778 3.18766 4.67565 1.73578 2.70885
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.33258 8.75384 2.79134 2.77258 2.00087

CAGE analysis