Hb_000327_240

Information

Type -
Description -
Location Contig327: 238585-244805
Sequence    

Annotation

kegg
ID rcu:RCOM_0744880
description ATP binding protein, putative
nr
ID XP_012073475.1
description PREDICTED: interaptin-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LNS7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06640 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34385: 238660-241325 , PASA_asmbl_34386: 241682-242456 , PASA_asmbl_34387: 241682-242456 , PASA_asmbl_34388: 242797-243260
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000327_240 0.0 - - PREDICTED: interaptin-like [Jatropha curcas]
2 Hb_001416_040 0.0818365623 - - acid phosphatase, putative [Ricinus communis]
3 Hb_002400_270 0.0828496026 - - PREDICTED: probable sucrose-phosphate synthase 1 isoform X1 [Jatropha curcas]
4 Hb_001040_170 0.0881881559 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21705, mitochondrial isoform X1 [Jatropha curcas]
5 Hb_000284_200 0.0940243136 - - -
6 Hb_000984_180 0.0978376483 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO3 isoform X1 [Jatropha curcas]
7 Hb_006816_290 0.0986053974 - - PREDICTED: uncharacterized protein LOC105647449 [Jatropha curcas]
8 Hb_000161_030 0.1046840363 transcription factor TF Family: TCP PREDICTED: transcription factor TCP8 [Jatropha curcas]
9 Hb_002026_110 0.1092623995 - - protein binding protein, putative [Ricinus communis]
10 Hb_002818_040 0.1114489857 - - tRNA synthetase-related family protein [Populus trichocarpa]
11 Hb_011316_110 0.1114789579 - - PREDICTED: receptor-like serine/threonine-protein kinase At4g25390 [Jatropha curcas]
12 Hb_002631_050 0.1115501529 - - membrane associated ring finger 1,8, putative [Ricinus communis]
13 Hb_000481_010 0.1120826585 - - PREDICTED: F-box/kelch-repeat protein SKIP6 [Jatropha curcas]
14 Hb_004993_010 0.113595864 - - PREDICTED: uncharacterized protein LOC104889591 [Beta vulgaris subsp. vulgaris]
15 Hb_000340_510 0.1142071576 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
16 Hb_000077_050 0.1164847573 - - PREDICTED: elongation factor G-1, mitochondrial isoform X1 [Jatropha curcas]
17 Hb_017168_010 0.1166611292 - - conserved hypothetical protein [Ricinus communis]
18 Hb_007447_010 0.1178619027 - - PREDICTED: CBS domain-containing protein CBSCBSPB3 isoform X3 [Jatropha curcas]
19 Hb_000599_120 0.119276618 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT34 [Jatropha curcas]
20 Hb_005237_010 0.1196337999 - - PREDICTED: uncharacterized protein LOC105630921 [Jatropha curcas]

Gene co-expression network

sample Hb_000327_240 Hb_000327_240 Hb_001416_040 Hb_001416_040 Hb_000327_240--Hb_001416_040 Hb_002400_270 Hb_002400_270 Hb_000327_240--Hb_002400_270 Hb_001040_170 Hb_001040_170 Hb_000327_240--Hb_001040_170 Hb_000284_200 Hb_000284_200 Hb_000327_240--Hb_000284_200 Hb_000984_180 Hb_000984_180 Hb_000327_240--Hb_000984_180 Hb_006816_290 Hb_006816_290 Hb_000327_240--Hb_006816_290 Hb_001416_040--Hb_006816_290 Hb_001416_040--Hb_000984_180 Hb_001416_040--Hb_002400_270 Hb_000491_080 Hb_000491_080 Hb_001416_040--Hb_000491_080 Hb_001433_170 Hb_001433_170 Hb_001416_040--Hb_001433_170 Hb_011316_110 Hb_011316_110 Hb_002400_270--Hb_011316_110 Hb_000742_250 Hb_000742_250 Hb_002400_270--Hb_000742_250 Hb_002818_040 Hb_002818_040 Hb_002400_270--Hb_002818_040 Hb_000369_060 Hb_000369_060 Hb_002400_270--Hb_000369_060 Hb_000107_100 Hb_000107_100 Hb_001040_170--Hb_000107_100 Hb_006091_030 Hb_006091_030 Hb_001040_170--Hb_006091_030 Hb_017168_010 Hb_017168_010 Hb_001040_170--Hb_017168_010 Hb_005237_010 Hb_005237_010 Hb_001040_170--Hb_005237_010 Hb_000340_510 Hb_000340_510 Hb_001040_170--Hb_000340_510 Hb_002681_140 Hb_002681_140 Hb_000284_200--Hb_002681_140 Hb_000015_010 Hb_000015_010 Hb_000284_200--Hb_000015_010 Hb_000847_070 Hb_000847_070 Hb_000284_200--Hb_000847_070 Hb_004502_030 Hb_004502_030 Hb_000284_200--Hb_004502_030 Hb_006637_060 Hb_006637_060 Hb_000284_200--Hb_006637_060 Hb_001514_200 Hb_001514_200 Hb_000284_200--Hb_001514_200 Hb_000599_120 Hb_000599_120 Hb_000984_180--Hb_000599_120 Hb_000078_130 Hb_000078_130 Hb_000984_180--Hb_000078_130 Hb_000057_060 Hb_000057_060 Hb_000984_180--Hb_000057_060 Hb_000984_180--Hb_001433_170 Hb_005288_120 Hb_005288_120 Hb_000984_180--Hb_005288_120 Hb_006816_290--Hb_002400_270 Hb_002111_050 Hb_002111_050 Hb_006816_290--Hb_002111_050 Hb_001001_160 Hb_001001_160 Hb_006816_290--Hb_001001_160 Hb_007447_010 Hb_007447_010 Hb_006816_290--Hb_007447_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
97.1899 23.3542 6.18487 9.18679 125.169 105.773
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
52.8981 49.1512 65.2474 14.8951 29.6969

CAGE analysis