Hb_000327_260

Information

Type -
Description -
Location Contig327: 274099-274671
Sequence    

Annotation

kegg
ID rcu:RCOM_0745330
description hypothetical protein
nr
ID XP_002525082.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SGG3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0745330 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34393: 274062-274833
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000327_260 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000539_040 0.0708575214 - - PREDICTED: uncharacterized protein LOC105636110 isoform X1 [Jatropha curcas]
3 Hb_009838_070 0.0807223377 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Jatropha curcas]
4 Hb_009393_130 0.0922424297 - - PREDICTED: uncharacterized protein LOC105638053 isoform X4 [Jatropha curcas]
5 Hb_000116_220 0.0930865943 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004096_210 0.0943433134 - - PREDICTED: uncharacterized protein LOC105638707 isoform X2 [Jatropha curcas]
7 Hb_000832_270 0.096816583 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000711_030 0.0988887705 - - hypothetical protein POPTR_0019s02860g [Populus trichocarpa]
9 Hb_003680_060 0.1025026552 - - hypothetical protein VITISV_022322 [Vitis vinifera]
10 Hb_137222_010 0.1065936634 - - PREDICTED: hippocampus abundant transcript-like protein 1 [Jatropha curcas]
11 Hb_000618_110 0.1067406229 - - hypothetical protein POPTR_0003s09870g [Populus trichocarpa]
12 Hb_000134_040 0.1082336579 - - PREDICTED: 30S ribosomal protein 2, chloroplastic [Jatropha curcas]
13 Hb_000190_230 0.1134434524 - - PREDICTED: sulfate transporter 3.1-like [Jatropha curcas]
14 Hb_002495_090 0.1143395898 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH48 isoform X2 [Jatropha curcas]
15 Hb_005488_190 0.1144665111 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
16 Hb_000866_020 0.1162306525 - - hypothetical protein B456_004G042000 [Gossypium raimondii]
17 Hb_000950_020 0.1172156302 - - PREDICTED: glycerol-3-phosphate dehydrogenase [NAD(+)] GPDHC1, cytosolic [Jatropha curcas]
18 Hb_007803_040 0.1175512546 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic [Jatropha curcas]
19 Hb_004650_050 0.1178762065 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
20 Hb_000948_120 0.1241813629 - - PREDICTED: uncharacterized protein LOC105634688 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000327_260 Hb_000327_260 Hb_000539_040 Hb_000539_040 Hb_000327_260--Hb_000539_040 Hb_009838_070 Hb_009838_070 Hb_000327_260--Hb_009838_070 Hb_009393_130 Hb_009393_130 Hb_000327_260--Hb_009393_130 Hb_000116_220 Hb_000116_220 Hb_000327_260--Hb_000116_220 Hb_004096_210 Hb_004096_210 Hb_000327_260--Hb_004096_210 Hb_000832_270 Hb_000832_270 Hb_000327_260--Hb_000832_270 Hb_000539_040--Hb_000116_220 Hb_000539_040--Hb_009838_070 Hb_000711_030 Hb_000711_030 Hb_000539_040--Hb_000711_030 Hb_000539_040--Hb_000832_270 Hb_137222_010 Hb_137222_010 Hb_000539_040--Hb_137222_010 Hb_004650_050 Hb_004650_050 Hb_009838_070--Hb_004650_050 Hb_009838_070--Hb_009393_130 Hb_003680_060 Hb_003680_060 Hb_009838_070--Hb_003680_060 Hb_009838_070--Hb_000711_030 Hb_009838_070--Hb_004096_210 Hb_009393_130--Hb_003680_060 Hb_007803_040 Hb_007803_040 Hb_009393_130--Hb_007803_040 Hb_003605_060 Hb_003605_060 Hb_009393_130--Hb_003605_060 Hb_010557_010 Hb_010557_010 Hb_009393_130--Hb_010557_010 Hb_002811_250 Hb_002811_250 Hb_009393_130--Hb_002811_250 Hb_000116_220--Hb_003680_060 Hb_000116_220--Hb_009838_070 Hb_007597_030 Hb_007597_030 Hb_000116_220--Hb_007597_030 Hb_005000_110 Hb_005000_110 Hb_000116_220--Hb_005000_110 Hb_000020_090 Hb_000020_090 Hb_000116_220--Hb_000020_090 Hb_000618_110 Hb_000618_110 Hb_004096_210--Hb_000618_110 Hb_004096_210--Hb_009393_130 Hb_000866_020 Hb_000866_020 Hb_004096_210--Hb_000866_020 Hb_000816_240 Hb_000816_240 Hb_004096_210--Hb_000816_240 Hb_001231_010 Hb_001231_010 Hb_000832_270--Hb_001231_010 Hb_000511_030 Hb_000511_030 Hb_000832_270--Hb_000511_030 Hb_000163_190 Hb_000163_190 Hb_000832_270--Hb_000163_190 Hb_000832_270--Hb_000116_220 Hb_000832_270--Hb_137222_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.23014 7.95068 99.2778 50.4848 1.88913 6.58538
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.51507 1.87094 1.62455 6.71555 109.585

CAGE analysis