Hb_000327_270

Information

Type -
Description -
Location Contig327: 277579-297817
Sequence    

Annotation

kegg
ID rcu:RCOM_0745220
description leukocyte receptor cluster (lrc) member, putative
nr
ID XP_012073405.1
description PREDICTED: leukocyte receptor cluster member 8 homolog isoform X1 [Jatropha curcas]
swissprot
ID Q32NW2
description Leukocyte receptor cluster member 8 homolog OS=Xenopus laevis GN=leng8 PE=2 SV=1
trembl
ID A0A067LNS2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06635 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34394: 277616-297871 , PASA_asmbl_34395: 280226-280558
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000327_270 0.0 - - PREDICTED: leukocyte receptor cluster member 8 homolog isoform X1 [Jatropha curcas]
2 Hb_000590_050 0.0433695419 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
3 Hb_003680_120 0.0480740823 - - PREDICTED: E3 ubiquitin-protein ligase UPL7 [Jatropha curcas]
4 Hb_003504_030 0.053256166 - - PREDICTED: serine/threonine-protein phosphatase PP1-like isoform X2 [Jatropha curcas]
5 Hb_000708_030 0.0555125159 - - PREDICTED: uncharacterized protein LOC105650742 [Jatropha curcas]
6 Hb_002732_040 0.0561245368 - - PREDICTED: uncharacterized protein LOC105628163 isoform X1 [Jatropha curcas]
7 Hb_000890_060 0.059567675 - - PREDICTED: sucrose nonfermenting 4-like protein [Jatropha curcas]
8 Hb_001004_060 0.0596118336 - - PREDICTED: uncharacterized protein LOC105630220 isoform X4 [Jatropha curcas]
9 Hb_105328_020 0.0597785801 - - PREDICTED: phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [Jatropha curcas]
10 Hb_020378_030 0.0601732828 - - PREDICTED: protein transport protein SEC31 homolog B [Jatropha curcas]
11 Hb_005730_040 0.0610555316 - - hypothetical protein PRUPE_ppa004338mg [Prunus persica]
12 Hb_008406_200 0.0615602831 transcription factor TF Family: SNF2 conserved hypothetical protein [Ricinus communis]
13 Hb_093458_040 0.0638342161 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
14 Hb_000699_030 0.064212994 - - PREDICTED: serine/threonine-protein phosphatase PP1-like isoform X2 [Jatropha curcas]
15 Hb_005653_090 0.064351654 - - PREDICTED: protein HIRA isoform X1 [Jatropha curcas]
16 Hb_001409_020 0.0647423283 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105638648 [Jatropha curcas]
17 Hb_000331_680 0.0656066838 - - Protein bem46, putative [Ricinus communis]
18 Hb_002263_020 0.0656455133 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
19 Hb_011037_030 0.0664521577 - - PREDICTED: uncharacterized protein LOC105641407 [Jatropha curcas]
20 Hb_000345_380 0.0674383914 - - PREDICTED: long chain acyl-CoA synthetase 7, peroxisomal [Jatropha curcas]

Gene co-expression network

sample Hb_000327_270 Hb_000327_270 Hb_000590_050 Hb_000590_050 Hb_000327_270--Hb_000590_050 Hb_003680_120 Hb_003680_120 Hb_000327_270--Hb_003680_120 Hb_003504_030 Hb_003504_030 Hb_000327_270--Hb_003504_030 Hb_000708_030 Hb_000708_030 Hb_000327_270--Hb_000708_030 Hb_002732_040 Hb_002732_040 Hb_000327_270--Hb_002732_040 Hb_000890_060 Hb_000890_060 Hb_000327_270--Hb_000890_060 Hb_020378_030 Hb_020378_030 Hb_000590_050--Hb_020378_030 Hb_000590_050--Hb_000890_060 Hb_009270_020 Hb_009270_020 Hb_000590_050--Hb_009270_020 Hb_000592_030 Hb_000592_030 Hb_000590_050--Hb_000592_030 Hb_001004_060 Hb_001004_060 Hb_000590_050--Hb_001004_060 Hb_003680_120--Hb_000708_030 Hb_000665_100 Hb_000665_100 Hb_003680_120--Hb_000665_100 Hb_002110_190 Hb_002110_190 Hb_003680_120--Hb_002110_190 Hb_011037_030 Hb_011037_030 Hb_003680_120--Hb_011037_030 Hb_005730_040 Hb_005730_040 Hb_003680_120--Hb_005730_040 Hb_000037_190 Hb_000037_190 Hb_003504_030--Hb_000037_190 Hb_001799_180 Hb_001799_180 Hb_003504_030--Hb_001799_180 Hb_013399_100 Hb_013399_100 Hb_003504_030--Hb_013399_100 Hb_003504_030--Hb_002732_040 Hb_001409_020 Hb_001409_020 Hb_003504_030--Hb_001409_020 Hb_006831_140 Hb_006831_140 Hb_000708_030--Hb_006831_140 Hb_000699_030 Hb_000699_030 Hb_000708_030--Hb_000699_030 Hb_000708_030--Hb_005730_040 Hb_093458_040 Hb_093458_040 Hb_000708_030--Hb_093458_040 Hb_000343_250 Hb_000343_250 Hb_002732_040--Hb_000343_250 Hb_007747_040 Hb_007747_040 Hb_002732_040--Hb_007747_040 Hb_000462_060 Hb_000462_060 Hb_002732_040--Hb_000462_060 Hb_002732_040--Hb_020378_030 Hb_000866_460 Hb_000866_460 Hb_002732_040--Hb_000866_460 Hb_000008_290 Hb_000008_290 Hb_000890_060--Hb_000008_290 Hb_001814_030 Hb_001814_030 Hb_000890_060--Hb_001814_030 Hb_007426_110 Hb_007426_110 Hb_000890_060--Hb_007426_110 Hb_000890_060--Hb_020378_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.2948 14.64 11.1258 13.3242 11.1321 14.3838
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.0334 10.5044 13.1959 13.0092 14.0651

CAGE analysis