Hb_000327_290

Information

Type -
Description -
Location Contig327: 327806-328048
Sequence    

Annotation

kegg
ID aly:ARALYDRAFT_470793
description hypothetical protein
nr
ID EMS67926.1
description Histone H4 [Triticum urartu]
swissprot
ID P0CG89
description Histone H4 OS=Glycine max PE=3 SV=1
trembl
ID R7W2D7
description Histone H4 OS=Aegilops tauschii GN=F775_32550 PE=3 SV=1
Gene Ontology
ID GO:0000786
description histone h4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34399: 327521-328765
cDNA
(Sanger)
(ID:Location)		 005_D03.ab1: 327527-328765 , 038_C11.ab1: 327527-328765

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000327_290 0.0 - - Histone H4 [Triticum urartu]
2 Hb_010504_030 0.1280355121 - - calmodulin homolog {EST} [Brassica napus, Naehan, root, Peptide Partial, 53 aa]
3 Hb_002687_080 0.1359543579 - - hypothetical protein JCGZ_06535 [Jatropha curcas]
4 Hb_007123_060 0.1416009924 - - PREDICTED: uncharacterized protein LOC105634060 [Jatropha curcas]
5 Hb_082407_010 0.1447083503 - - protein farnesyltransferase alpha subunit, putative [Ricinus communis]
6 Hb_112047_010 0.1449089631 - - -
7 Hb_136731_010 0.1494898729 - - PREDICTED: uncharacterized protein LOC105628378 isoform X4 [Jatropha curcas]
8 Hb_128998_010 0.1494970261 - - PREDICTED: uncharacterized protein LOC105650916 [Jatropha curcas]
9 Hb_000429_250 0.1522443375 - - hypothetical protein L484_000744 [Morus notabilis]
10 Hb_000416_070 0.1565727212 - - hypothetical protein JCGZ_21620 [Jatropha curcas]
11 Hb_001377_180 0.1581632362 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1 [Jatropha curcas]
12 Hb_140291_010 0.1604034873 - - hypothetical protein JCGZ_17222 [Jatropha curcas]
13 Hb_016604_030 0.1609773103 - - histone H4 [Zea mays]
14 Hb_004883_050 0.1613734899 - - PREDICTED: probable UDP-arabinopyranose mutase 5 isoform X2 [Vitis vinifera]
15 Hb_005367_010 0.1628076004 - - -
16 Hb_002192_090 0.1638098048 - - hypothetical protein AMTR_s00029p00055000 [Amborella trichopoda]
17 Hb_150023_010 0.1658469398 - - 50S ribosomal protein L2, putative [Ricinus communis]
18 Hb_001623_290 0.1678132264 - - unknown [Populus trichocarpa]
19 Hb_184570_010 0.1697214427 - - PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
20 Hb_012760_130 0.1704155151 - - PREDICTED: uncharacterized protein LOC105647093 [Jatropha curcas]

Gene co-expression network

sample Hb_000327_290 Hb_000327_290 Hb_010504_030 Hb_010504_030 Hb_000327_290--Hb_010504_030 Hb_002687_080 Hb_002687_080 Hb_000327_290--Hb_002687_080 Hb_007123_060 Hb_007123_060 Hb_000327_290--Hb_007123_060 Hb_082407_010 Hb_082407_010 Hb_000327_290--Hb_082407_010 Hb_112047_010 Hb_112047_010 Hb_000327_290--Hb_112047_010 Hb_136731_010 Hb_136731_010 Hb_000327_290--Hb_136731_010 Hb_128998_010 Hb_128998_010 Hb_010504_030--Hb_128998_010 Hb_000176_120 Hb_000176_120 Hb_010504_030--Hb_000176_120 Hb_000001_040 Hb_000001_040 Hb_010504_030--Hb_000001_040 Hb_000265_130 Hb_000265_130 Hb_010504_030--Hb_000265_130 Hb_000007_460 Hb_000007_460 Hb_010504_030--Hb_000007_460 Hb_000416_070 Hb_000416_070 Hb_002687_080--Hb_000416_070 Hb_140291_010 Hb_140291_010 Hb_002687_080--Hb_140291_010 Hb_152554_010 Hb_152554_010 Hb_002687_080--Hb_152554_010 Hb_099878_050 Hb_099878_050 Hb_002687_080--Hb_099878_050 Hb_000136_180 Hb_000136_180 Hb_002687_080--Hb_000136_180 Hb_004883_050 Hb_004883_050 Hb_007123_060--Hb_004883_050 Hb_012760_130 Hb_012760_130 Hb_007123_060--Hb_012760_130 Hb_001545_050 Hb_001545_050 Hb_007123_060--Hb_001545_050 Hb_184570_010 Hb_184570_010 Hb_007123_060--Hb_184570_010 Hb_012120_030 Hb_012120_030 Hb_007123_060--Hb_012120_030 Hb_000268_010 Hb_000268_010 Hb_082407_010--Hb_000268_010 Hb_013492_010 Hb_013492_010 Hb_082407_010--Hb_013492_010 Hb_003405_060 Hb_003405_060 Hb_082407_010--Hb_003405_060 Hb_182964_010 Hb_182964_010 Hb_082407_010--Hb_182964_010 Hb_082407_010--Hb_007123_060 Hb_112047_010--Hb_128998_010 Hb_000429_250 Hb_000429_250 Hb_112047_010--Hb_000429_250 Hb_001623_290 Hb_001623_290 Hb_112047_010--Hb_001623_290 Hb_001623_300 Hb_001623_300 Hb_112047_010--Hb_001623_300 Hb_112047_010--Hb_000136_180 Hb_001377_180 Hb_001377_180 Hb_136731_010--Hb_001377_180 Hb_005054_070 Hb_005054_070 Hb_136731_010--Hb_005054_070 Hb_000155_180 Hb_000155_180 Hb_136731_010--Hb_000155_180 Hb_000812_040 Hb_000812_040 Hb_136731_010--Hb_000812_040 Hb_006502_080 Hb_006502_080 Hb_136731_010--Hb_006502_080 Hb_005367_010 Hb_005367_010 Hb_136731_010--Hb_005367_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
607.534 513.225 700.336 1736.83 557.996 2851.55
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1238.48 1246.34 301.449 138.231 139.435

CAGE analysis