Hb_000327_310

Information

Type -
Description -
Location Contig327: 341285-348865
Sequence    

Annotation

kegg
ID pop:POPTR_0010s22020g
description POPTRDRAFT_886640; hypothetical protein
nr
ID XP_012073060.1
description PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]
swissprot
ID Q9LKR4
description Putative protein FAR1-RELATED SEQUENCE 10 OS=Arabidopsis thaliana GN=FRS10 PE=2 SV=2
trembl
ID A0A067LFQ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06604 PE=4 SV=1
Gene Ontology
ID GO:0046540
description u4 u6 small nuclear ribonucleoprotein prp3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34402: 341323-346604
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000327_310 0.0 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]
2 Hb_001975_020 0.0525302838 - - PREDICTED: uncharacterized protein LOC105637186 [Jatropha curcas]
3 Hb_004724_360 0.0541521298 - - OTU-like cysteine protease family protein [Populus trichocarpa]
4 Hb_073171_080 0.0642361919 - - PREDICTED: MMS19 nucleotide excision repair protein homolog isoform X1 [Jatropha curcas]
5 Hb_000230_370 0.0689675859 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1 [Jatropha curcas]
6 Hb_046615_020 0.0717824963 - - PREDICTED: uncharacterized protein LOC105649409 [Jatropha curcas]
7 Hb_001366_040 0.072151148 transcription factor TF Family: SNF2 PREDICTED: endoribonuclease Dicer homolog 1 [Jatropha curcas]
8 Hb_003656_160 0.0729140778 transcription factor TF Family: Alfin-like hypothetical protein B456_013G226400 [Gossypium raimondii]
9 Hb_005295_040 0.0752368226 - - PREDICTED: polyadenylate-binding protein RBP47-like [Jatropha curcas]
10 Hb_002133_030 0.0754364745 - - PREDICTED: diphthamide biosynthesis protein 1 [Jatropha curcas]
11 Hb_000001_180 0.0769934908 - - PREDICTED: uncharacterized protein LOC105648978 [Jatropha curcas]
12 Hb_175338_020 0.0771363341 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
13 Hb_002883_010 0.077756671 - - PREDICTED: putative methyltransferase NSUN6 isoform X1 [Jatropha curcas]
14 Hb_000076_080 0.0781376752 - - PREDICTED: protein MOS2 [Jatropha curcas]
15 Hb_004128_080 0.0787508971 transcription factor TF Family: Orphans PREDICTED: two-component response regulator-like APRR7 [Jatropha curcas]
16 Hb_000684_420 0.0807875641 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
17 Hb_002725_070 0.0809085806 - - hypothetical protein PRUPE_ppa005949mg [Prunus persica]
18 Hb_002400_180 0.0817077697 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004096_020 0.0818884254 - - PREDICTED: KH domain-containing protein At4g18375-like, partial [Fragaria vesca subsp. vesca]
20 Hb_025477_060 0.0823675419 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]

Gene co-expression network

sample Hb_000327_310 Hb_000327_310 Hb_001975_020 Hb_001975_020 Hb_000327_310--Hb_001975_020 Hb_004724_360 Hb_004724_360 Hb_000327_310--Hb_004724_360 Hb_073171_080 Hb_073171_080 Hb_000327_310--Hb_073171_080 Hb_000230_370 Hb_000230_370 Hb_000327_310--Hb_000230_370 Hb_046615_020 Hb_046615_020 Hb_000327_310--Hb_046615_020 Hb_001366_040 Hb_001366_040 Hb_000327_310--Hb_001366_040 Hb_001975_020--Hb_046615_020 Hb_031754_010 Hb_031754_010 Hb_001975_020--Hb_031754_010 Hb_005295_040 Hb_005295_040 Hb_001975_020--Hb_005295_040 Hb_000116_280 Hb_000116_280 Hb_001975_020--Hb_000116_280 Hb_003018_160 Hb_003018_160 Hb_001975_020--Hb_003018_160 Hb_000076_080 Hb_000076_080 Hb_004724_360--Hb_000076_080 Hb_001504_160 Hb_001504_160 Hb_004724_360--Hb_001504_160 Hb_000684_420 Hb_000684_420 Hb_004724_360--Hb_000684_420 Hb_000001_180 Hb_000001_180 Hb_004724_360--Hb_000001_180 Hb_004724_360--Hb_005295_040 Hb_073171_080--Hb_000684_420 Hb_073171_080--Hb_004724_360 Hb_000236_280 Hb_000236_280 Hb_073171_080--Hb_000236_280 Hb_001396_290 Hb_001396_290 Hb_073171_080--Hb_001396_290 Hb_002400_180 Hb_002400_180 Hb_073171_080--Hb_002400_180 Hb_000230_370--Hb_046615_020 Hb_001301_210 Hb_001301_210 Hb_000230_370--Hb_001301_210 Hb_002883_010 Hb_002883_010 Hb_000230_370--Hb_002883_010 Hb_000230_370--Hb_001975_020 Hb_000318_140 Hb_000318_140 Hb_000230_370--Hb_000318_140 Hb_002043_170 Hb_002043_170 Hb_046615_020--Hb_002043_170 Hb_046615_020--Hb_031754_010 Hb_004096_020 Hb_004096_020 Hb_046615_020--Hb_004096_020 Hb_000531_090 Hb_000531_090 Hb_046615_020--Hb_000531_090 Hb_004055_040 Hb_004055_040 Hb_001366_040--Hb_004055_040 Hb_002798_040 Hb_002798_040 Hb_001366_040--Hb_002798_040 Hb_004452_100 Hb_004452_100 Hb_001366_040--Hb_004452_100 Hb_001366_040--Hb_031754_010 Hb_001366_040--Hb_001504_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
70.9975 38.4676 15.3344 8.07397 74.8439 77.4654
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.0503 18.8712 29.5601 20.0352 13.8622

CAGE analysis