Hb_000327_330

Information

Type -
Description -
Location Contig327: 366227-380895
Sequence    

Annotation

kegg
ID rcu:RCOM_0626480
description hypothetical protein
nr
ID XP_002526795.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SLC6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0626480 PE=4 SV=1
Gene Ontology
ID GO:0005829
description calponin homology domain-containing protein ddb_g0272472 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34406: 366164-367406 , PASA_asmbl_34407: 370818-379826
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000327_330 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000318_220 0.0681846521 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003687_080 0.0782592582 - - PREDICTED: casein kinase I-like [Jatropha curcas]
4 Hb_001623_490 0.0791184319 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At2g33255 isoform X2 [Jatropha curcas]
5 Hb_000086_270 0.0803776817 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]
6 Hb_002218_020 0.0826910964 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
7 Hb_003071_030 0.0839710406 - - PREDICTED: 20 kDa chaperonin, chloroplastic [Jatropha curcas]
8 Hb_006588_190 0.0847606327 - - PREDICTED: ataxin-3 homolog [Jatropha curcas]
9 Hb_002026_090 0.0859549953 - - PREDICTED: ubiquitin-conjugating enzyme E2 4-like [Jatropha curcas]
10 Hb_002107_050 0.0891049391 - - PREDICTED: prostaglandin E synthase 2 [Jatropha curcas]
11 Hb_004158_050 0.0892169281 - - hypothetical protein JCGZ_09026 [Jatropha curcas]
12 Hb_012779_080 0.0894587944 - - PREDICTED: carbon catabolite repressor protein 4 homolog 3 isoform X3 [Jatropha curcas]
13 Hb_021596_020 0.0929421566 - - hypothetical protein JCGZ_02034 [Jatropha curcas]
14 Hb_003506_030 0.0932234695 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X2 [Jatropha curcas]
15 Hb_016448_010 0.0940073929 - - Protein MYG1, putative [Ricinus communis]
16 Hb_010620_050 0.0943868596 - - PREDICTED: uncharacterized protein LOC105646119 [Jatropha curcas]
17 Hb_002249_020 0.0945130517 - - PREDICTED: dual specificity protein phosphatase PHS1 [Jatropha curcas]
18 Hb_001504_010 0.0952157151 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
19 Hb_003449_100 0.0961397601 - - PREDICTED: protein YIPF6 homolog [Jatropha curcas]
20 Hb_003883_010 0.0993295984 - - PREDICTED: cold-inducible RNA-binding protein [Jatropha curcas]

Gene co-expression network

sample Hb_000327_330 Hb_000327_330 Hb_000318_220 Hb_000318_220 Hb_000327_330--Hb_000318_220 Hb_003687_080 Hb_003687_080 Hb_000327_330--Hb_003687_080 Hb_001623_490 Hb_001623_490 Hb_000327_330--Hb_001623_490 Hb_000086_270 Hb_000086_270 Hb_000327_330--Hb_000086_270 Hb_002218_020 Hb_002218_020 Hb_000327_330--Hb_002218_020 Hb_003071_030 Hb_003071_030 Hb_000327_330--Hb_003071_030 Hb_001799_160 Hb_001799_160 Hb_000318_220--Hb_001799_160 Hb_003883_010 Hb_003883_010 Hb_000318_220--Hb_003883_010 Hb_000318_220--Hb_002218_020 Hb_001504_010 Hb_001504_010 Hb_000318_220--Hb_001504_010 Hb_001053_190 Hb_001053_190 Hb_000318_220--Hb_001053_190 Hb_001160_110 Hb_001160_110 Hb_003687_080--Hb_001160_110 Hb_074399_010 Hb_074399_010 Hb_003687_080--Hb_074399_010 Hb_000001_090 Hb_000001_090 Hb_003687_080--Hb_000001_090 Hb_005511_130 Hb_005511_130 Hb_003687_080--Hb_005511_130 Hb_003687_080--Hb_000318_220 Hb_012779_080 Hb_012779_080 Hb_001623_490--Hb_012779_080 Hb_005665_090 Hb_005665_090 Hb_001623_490--Hb_005665_090 Hb_002026_090 Hb_002026_090 Hb_001623_490--Hb_002026_090 Hb_001623_490--Hb_002218_020 Hb_016448_010 Hb_016448_010 Hb_001623_490--Hb_016448_010 Hb_006120_040 Hb_006120_040 Hb_000086_270--Hb_006120_040 Hb_002249_020 Hb_002249_020 Hb_000086_270--Hb_002249_020 Hb_000663_080 Hb_000663_080 Hb_000086_270--Hb_000663_080 Hb_006438_020 Hb_006438_020 Hb_000086_270--Hb_006438_020 Hb_000086_270--Hb_016448_010 Hb_102948_010 Hb_102948_010 Hb_002218_020--Hb_102948_010 Hb_001430_020 Hb_001430_020 Hb_002218_020--Hb_001430_020 Hb_012438_030 Hb_012438_030 Hb_002218_020--Hb_012438_030 Hb_087313_010 Hb_087313_010 Hb_002218_020--Hb_087313_010 Hb_000663_020 Hb_000663_020 Hb_002218_020--Hb_000663_020 Hb_002218_020--Hb_003883_010 Hb_010620_050 Hb_010620_050 Hb_003071_030--Hb_010620_050 Hb_002107_050 Hb_002107_050 Hb_003071_030--Hb_002107_050 Hb_001789_160 Hb_001789_160 Hb_003071_030--Hb_001789_160 Hb_000302_190 Hb_000302_190 Hb_003071_030--Hb_000302_190 Hb_003071_030--Hb_012779_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.26425 5.79779 15.4239 7.85659 4.01945 2.64624
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.99332 3.60449 2.23895 3.53548 8.22421

CAGE analysis