Hb_000327_350

Information

Type -
Description -
Location Contig327: 405541-406905
Sequence    

Annotation

kegg
ID rcu:RCOM_0625860
description acyltransferase, putative
nr
ID XP_012073194.1
description PREDICTED: 3-ketoacyl-CoA synthase 21-like [Jatropha curcas]
swissprot
ID Q9LZ72
description 3-ketoacyl-CoA synthase 21 OS=Arabidopsis thaliana GN=KCS21 PE=2 SV=1
trembl
ID B9SLB4
description 3-ketoacyl-CoA synthase OS=Ricinus communis GN=RCOM_0625860 PE=3 SV=1
Gene Ontology
ID GO:0016020
description 3-ketoacyl- synthase 21-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000327_350 0.0 - - PREDICTED: 3-ketoacyl-CoA synthase 21-like [Jatropha curcas]
2 Hb_000816_090 0.0459862724 transcription factor TF Family: TRAF protein binding protein, putative [Ricinus communis]
3 Hb_003060_020 0.0514264382 - - serine carboxypeptidase, putative [Ricinus communis]
4 Hb_000521_030 0.0695354118 - - PREDICTED: uncharacterized protein LOC105650350 [Jatropha curcas]
5 Hb_003528_090 0.0714913858 - - Uncharacterized protein TCM_037169 [Theobroma cacao]
6 Hb_000318_500 0.0736260521 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000244_290 0.0738293691 - - PREDICTED: UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 [Jatropha curcas]
8 Hb_002785_020 0.0757074608 - - PREDICTED: laccase-4-like [Jatropha curcas]
9 Hb_005396_020 0.0761753626 - - hypothetical protein CICLE_v10033278mg [Citrus clementina]
10 Hb_180518_010 0.0785743489 - - PREDICTED: receptor-like protein 2 [Jatropha curcas]
11 Hb_000193_130 0.0794147023 - - nucleic acid binding protein, putative [Ricinus communis]
12 Hb_103468_010 0.0822517302 - - protein binding protein, putative [Ricinus communis]
13 Hb_009767_040 0.0838957936 - - PREDICTED: uncharacterized protein LOC105127022 [Populus euphratica]
14 Hb_027577_010 0.0847717983 - - PREDICTED: uncharacterized protein LOC104779928 [Camelina sativa]
15 Hb_000645_230 0.0905979852 - - PREDICTED: chitinase-like protein 2 [Jatropha curcas]
16 Hb_006570_170 0.0913993677 - - Gibberellin-regulated protein 1 precursor, putative [Ricinus communis]
17 Hb_006249_010 0.0919342372 - - hypothetical protein JCGZ_13152 [Jatropha curcas]
18 Hb_000483_340 0.0921066804 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004884_040 0.0923401887 - - hypothetical protein POPTR_0016s12910g [Populus trichocarpa]
20 Hb_001157_120 0.0925463116 - - PREDICTED: dirigent protein 19-like [Jatropha curcas]

Gene co-expression network

sample Hb_000327_350 Hb_000327_350 Hb_000816_090 Hb_000816_090 Hb_000327_350--Hb_000816_090 Hb_003060_020 Hb_003060_020 Hb_000327_350--Hb_003060_020 Hb_000521_030 Hb_000521_030 Hb_000327_350--Hb_000521_030 Hb_003528_090 Hb_003528_090 Hb_000327_350--Hb_003528_090 Hb_000318_500 Hb_000318_500 Hb_000327_350--Hb_000318_500 Hb_000244_290 Hb_000244_290 Hb_000327_350--Hb_000244_290 Hb_000816_090--Hb_003060_020 Hb_006570_170 Hb_006570_170 Hb_000816_090--Hb_006570_170 Hb_005396_020 Hb_005396_020 Hb_000816_090--Hb_005396_020 Hb_000816_090--Hb_003528_090 Hb_001634_050 Hb_001634_050 Hb_000816_090--Hb_001634_050 Hb_003060_020--Hb_003528_090 Hb_003060_020--Hb_005396_020 Hb_103468_010 Hb_103468_010 Hb_003060_020--Hb_103468_010 Hb_003060_020--Hb_001634_050 Hb_009767_040 Hb_009767_040 Hb_000521_030--Hb_009767_040 Hb_002757_040 Hb_002757_040 Hb_000521_030--Hb_002757_040 Hb_002785_020 Hb_002785_020 Hb_000521_030--Hb_002785_020 Hb_000193_130 Hb_000193_130 Hb_000521_030--Hb_000193_130 Hb_000521_030--Hb_000816_090 Hb_001157_120 Hb_001157_120 Hb_003528_090--Hb_001157_120 Hb_001401_130 Hb_001401_130 Hb_003528_090--Hb_001401_130 Hb_003528_090--Hb_005396_020 Hb_004884_040 Hb_004884_040 Hb_000318_500--Hb_004884_040 Hb_006249_010 Hb_006249_010 Hb_000318_500--Hb_006249_010 Hb_000483_340 Hb_000483_340 Hb_000318_500--Hb_000483_340 Hb_002734_020 Hb_002734_020 Hb_000318_500--Hb_002734_020 Hb_000318_500--Hb_000816_090 Hb_011344_110 Hb_011344_110 Hb_000244_290--Hb_011344_110 Hb_000628_070 Hb_000628_070 Hb_000244_290--Hb_000628_070 Hb_000243_240 Hb_000243_240 Hb_000244_290--Hb_000243_240 Hb_000244_290--Hb_000816_090 Hb_000244_290--Hb_001157_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 10.0794 11.6091 389.41 0 0.124624
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0696776 0.0274071 0 2.62918 58.125

CAGE analysis