Hb_000328_010

Information

Type -
Description -
Location Contig328: 38844-46550
Sequence    

Annotation

kegg
ID rcu:RCOM_0443980
description hypothetical protein
nr
ID XP_012071542.1
description PREDICTED: QWRF motif-containing protein 8-like [Jatropha curcas]
swissprot
ID Q9SUH5
description QWRF motif-containing protein 8 OS=Arabidopsis thaliana GN=QWRF8 PE=2 SV=1
trembl
ID A0A067KR98
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04059 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34440: 38374-38749 , PASA_asmbl_34441: 39272-40042
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000328_010 0.0 - - PREDICTED: QWRF motif-containing protein 8-like [Jatropha curcas]
2 Hb_006153_160 0.1179895211 - - PREDICTED: oxysterol-binding protein-related protein 2A isoform X4 [Jatropha curcas]
3 Hb_000193_340 0.1219769265 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
4 Hb_002498_030 0.1296878815 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000086_210 0.1402206209 - - ABC transporter family protein [Hevea brasiliensis]
6 Hb_017439_010 0.1404407259 - - putative actin-97 protein [Linum usitatissimum]
7 Hb_005144_120 0.1404417628 - - PREDICTED: probable glucuronoxylan glucuronosyltransferase IRX7 [Jatropha curcas]
8 Hb_001544_050 0.1474027591 - - PREDICTED: U-box domain-containing protein 11-like [Jatropha curcas]
9 Hb_001369_010 0.1524480363 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
10 Hb_003408_010 0.1530822896 - - fructokinase [Manihot esculenta]
11 Hb_010889_010 0.1572861973 - - PREDICTED: myosin-12 [Jatropha curcas]
12 Hb_000984_150 0.1588005605 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001180_010 0.1588463104 - - PREDICTED: glucan endo-1,3-beta-glucosidase 9 [Jatropha curcas]
14 Hb_001433_150 0.1597482548 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000856_400 0.1606132025 - - PREDICTED: protein IQ-DOMAIN 31-like [Jatropha curcas]
16 Hb_008725_080 0.1612796883 - - PREDICTED: probable galacturonosyltransferase-like 7 [Jatropha curcas]
17 Hb_000108_240 0.1635090639 - - hypothetical protein Csa_1G600150 [Cucumis sativus]
18 Hb_004041_050 0.1641162089 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
19 Hb_002759_220 0.165105118 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
20 Hb_042083_030 0.1669669114 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_000328_010 Hb_000328_010 Hb_006153_160 Hb_006153_160 Hb_000328_010--Hb_006153_160 Hb_000193_340 Hb_000193_340 Hb_000328_010--Hb_000193_340 Hb_002498_030 Hb_002498_030 Hb_000328_010--Hb_002498_030 Hb_000086_210 Hb_000086_210 Hb_000328_010--Hb_000086_210 Hb_017439_010 Hb_017439_010 Hb_000328_010--Hb_017439_010 Hb_005144_120 Hb_005144_120 Hb_000328_010--Hb_005144_120 Hb_006153_160--Hb_000193_340 Hb_002759_220 Hb_002759_220 Hb_006153_160--Hb_002759_220 Hb_012395_110 Hb_012395_110 Hb_006153_160--Hb_012395_110 Hb_001433_150 Hb_001433_150 Hb_006153_160--Hb_001433_150 Hb_007101_260 Hb_007101_260 Hb_006153_160--Hb_007101_260 Hb_000193_340--Hb_007101_260 Hb_161396_010 Hb_161396_010 Hb_000193_340--Hb_161396_010 Hb_000193_340--Hb_002759_220 Hb_000808_150 Hb_000808_150 Hb_000193_340--Hb_000808_150 Hb_002498_030--Hb_017439_010 Hb_001102_160 Hb_001102_160 Hb_002498_030--Hb_001102_160 Hb_003408_010 Hb_003408_010 Hb_002498_030--Hb_003408_010 Hb_034726_010 Hb_034726_010 Hb_002498_030--Hb_034726_010 Hb_000011_310 Hb_000011_310 Hb_002498_030--Hb_000011_310 Hb_000139_300 Hb_000139_300 Hb_000086_210--Hb_000139_300 Hb_000152_440 Hb_000152_440 Hb_000086_210--Hb_000152_440 Hb_005074_040 Hb_005074_040 Hb_000086_210--Hb_005074_040 Hb_000749_020 Hb_000749_020 Hb_000086_210--Hb_000749_020 Hb_005563_010 Hb_005563_010 Hb_000086_210--Hb_005563_010 Hb_000935_040 Hb_000935_040 Hb_000086_210--Hb_000935_040 Hb_001401_040 Hb_001401_040 Hb_017439_010--Hb_001401_040 Hb_003055_090 Hb_003055_090 Hb_017439_010--Hb_003055_090 Hb_001268_160 Hb_001268_160 Hb_017439_010--Hb_001268_160 Hb_010889_010 Hb_010889_010 Hb_017439_010--Hb_010889_010 Hb_005144_120--Hb_000086_210 Hb_011004_050 Hb_011004_050 Hb_005144_120--Hb_011004_050 Hb_008179_030 Hb_008179_030 Hb_005144_120--Hb_008179_030 Hb_009222_110 Hb_009222_110 Hb_005144_120--Hb_009222_110 Hb_005144_120--Hb_005563_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.268798 1.08503 7.44719 9.99423 0.233048 0.129989
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.0629 0.818137 1.86066 0.484719 5.49097

CAGE analysis