Hb_000328_030

Information

Type -
Description -
Location Contig328: 62070-70852
Sequence    

Annotation

kegg
ID pop:POPTR_0018s11290g
description POPTRDRAFT_578717; cellulose synthase family protein
nr
ID XP_012071537.1
description PREDICTED: cellulose synthase A catalytic subunit 7 [UDP-forming] [Jatropha curcas]
swissprot
ID Q9SWW6
description Cellulose synthase A catalytic subunit 7 [UDP-forming] OS=Arabidopsis thaliana GN=CESA7 PE=1 SV=1
trembl
ID A0A067Y8E0
description Cellulose synthase OS=Populus tomentosa GN=CesA7 PE=3 SV=1
Gene Ontology
ID GO:0005886
description cellulose synthase 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34442: 62720-63503
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000328_030 0.0 - - PREDICTED: cellulose synthase A catalytic subunit 7 [UDP-forming] [Jatropha curcas]
2 Hb_000086_490 0.0426464918 - - cellulose synthase [Populus tomentosa]
3 Hb_001377_230 0.0482742883 - - PREDICTED: uncharacterized protein LOC105135159 [Populus euphratica]
4 Hb_000165_260 0.0519676366 - - PREDICTED: uncharacterized protein LOC105133752 isoform X2 [Populus euphratica]
5 Hb_042083_010 0.0539761016 - - PREDICTED: cellulose synthase A catalytic subunit 8 [UDP-forming] [Jatropha curcas]
6 Hb_005523_030 0.0595982042 - - PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]
7 Hb_015807_090 0.0597400817 - - PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]
8 Hb_003090_190 0.0660905801 - - PREDICTED: 17.3 kDa class I heat shock protein-like [Nelumbo nucifera]
9 Hb_000776_090 0.0710208251 - - PREDICTED: COBRA-like protein 4 [Jatropha curcas]
10 Hb_002078_180 0.0711431623 - - PREDICTED: 65-kDa microtubule-associated protein 8 [Jatropha curcas]
11 Hb_005686_040 0.0720111321 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000311_100 0.0729824754 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001377_220 0.0744520997 - - dopamine beta-monooxygenase, putative [Ricinus communis]
14 Hb_001712_030 0.0748810888 - - PREDICTED: lysine-rich arabinogalactan protein 19 [Jatropha curcas]
15 Hb_007227_030 0.0765747223 - - hypothetical protein JCGZ_24975 [Jatropha curcas]
16 Hb_001935_060 0.0766487439 - - PREDICTED: metalloendoproteinase 1 [Jatropha curcas]
17 Hb_002311_010 0.0775472115 - - PREDICTED: chitinase-like protein 2 [Jatropha curcas]
18 Hb_001051_060 0.0788749042 - - UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter, putative [Ricinus communis]
19 Hb_000193_320 0.0792580755 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000245_110 0.0794552001 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 12-like [Jatropha curcas]

Gene co-expression network

sample Hb_000328_030 Hb_000328_030 Hb_000086_490 Hb_000086_490 Hb_000328_030--Hb_000086_490 Hb_001377_230 Hb_001377_230 Hb_000328_030--Hb_001377_230 Hb_000165_260 Hb_000165_260 Hb_000328_030--Hb_000165_260 Hb_042083_010 Hb_042083_010 Hb_000328_030--Hb_042083_010 Hb_005523_030 Hb_005523_030 Hb_000328_030--Hb_005523_030 Hb_015807_090 Hb_015807_090 Hb_000328_030--Hb_015807_090 Hb_000086_490--Hb_005523_030 Hb_000086_490--Hb_015807_090 Hb_005686_040 Hb_005686_040 Hb_000086_490--Hb_005686_040 Hb_001051_060 Hb_001051_060 Hb_000086_490--Hb_001051_060 Hb_002078_180 Hb_002078_180 Hb_000086_490--Hb_002078_180 Hb_001377_230--Hb_000086_490 Hb_001377_230--Hb_042083_010 Hb_001377_230--Hb_005523_030 Hb_001377_230--Hb_015807_090 Hb_001377_230--Hb_000165_260 Hb_003090_190 Hb_003090_190 Hb_000165_260--Hb_003090_190 Hb_000311_100 Hb_000311_100 Hb_000165_260--Hb_000311_100 Hb_007227_030 Hb_007227_030 Hb_000165_260--Hb_007227_030 Hb_001712_030 Hb_001712_030 Hb_000165_260--Hb_001712_030 Hb_000165_260--Hb_000086_490 Hb_042083_010--Hb_015807_090 Hb_042083_010--Hb_000086_490 Hb_006065_030 Hb_006065_030 Hb_042083_010--Hb_006065_030 Hb_042083_010--Hb_005523_030 Hb_012633_020 Hb_012633_020 Hb_042083_010--Hb_012633_020 Hb_005523_030--Hb_015807_090 Hb_005523_030--Hb_001051_060 Hb_005523_030--Hb_005686_040 Hb_000776_090 Hb_000776_090 Hb_005523_030--Hb_000776_090 Hb_005523_030--Hb_002078_180 Hb_003747_160 Hb_003747_160 Hb_015807_090--Hb_003747_160 Hb_015807_090--Hb_002078_180 Hb_015807_090--Hb_001051_060 Hb_015807_090--Hb_005686_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0289274 7.18315 4.49172 76.7557 0.134619 0.0304541
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.01252 0 0 0.24991 58.0089

CAGE analysis