Hb_000329_020

Information

Type -
Description -
Location Contig329: 12192-16463
Sequence    

Annotation

kegg
ID cic:CICLE_v10022677mg
description hypothetical protein
nr
ID BAA96366.1
description cytoplasmic ribosomal protein S13 [Panax ginseng]
swissprot
ID P62302
description 40S ribosomal protein S13 OS=Glycine max GN=RPS13 PE=2 SV=1
trembl
ID Q9MAV9
description Cytoplasmic ribosomal protein S13 OS=Panax ginseng PE=2 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34479: 14455-16415
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000329_020 0.0 - - cytoplasmic ribosomal protein S13 [Panax ginseng]
2 Hb_172221_010 0.0435494203 - - PREDICTED: 60S ribosomal protein L37-1 [Jatropha curcas]
3 Hb_000042_260 0.0676577024 - - PREDICTED: uncharacterized protein LOC105632814 [Jatropha curcas]
4 Hb_026398_010 0.0721332333 - - hypothetical protein B456_010G132100 [Gossypium raimondii]
5 Hb_002909_130 0.073302753 - - Uncharacterized protein isoform 1 [Theobroma cacao]
6 Hb_000331_640 0.0861213289 transcription factor TF Family: TAZ protein binding protein, putative [Ricinus communis]
7 Hb_019516_100 0.0877624667 - - 40S ribosomal protein S14, putative [Ricinus communis]
8 Hb_011311_010 0.0925205126 - - 60S ribosomal protein L27C [Hevea brasiliensis]
9 Hb_002588_010 0.0930808287 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
10 Hb_007944_040 0.0938166186 - - 60S ribosomal protein L18aB [Hevea brasiliensis]
11 Hb_002660_030 0.0942056178 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001085_270 0.0968472572 - - 60S ribosomal protein L13aA [Hevea brasiliensis]
13 Hb_012395_130 0.097749512 - - Os02g0814700 [Oryza sativa Japonica Group]
14 Hb_009384_020 0.1004563016 - - hypothetical protein JCGZ_24168 [Jatropha curcas]
15 Hb_001158_230 0.101187183 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM8 [Jatropha curcas]
16 Hb_007120_090 0.1054760054 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
17 Hb_000172_420 0.1079330711 - - 60S ribosomal protein L30, putative [Ricinus communis]
18 Hb_000676_160 0.1082933416 - - folate carrier protein, putative [Ricinus communis]
19 Hb_002006_130 0.1083225397 - - PREDICTED: uncharacterized protein LOC105648712 [Jatropha curcas]
20 Hb_000062_390 0.1083307034 - - PREDICTED: protein Iojap-related, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000329_020 Hb_000329_020 Hb_172221_010 Hb_172221_010 Hb_000329_020--Hb_172221_010 Hb_000042_260 Hb_000042_260 Hb_000329_020--Hb_000042_260 Hb_026398_010 Hb_026398_010 Hb_000329_020--Hb_026398_010 Hb_002909_130 Hb_002909_130 Hb_000329_020--Hb_002909_130 Hb_000331_640 Hb_000331_640 Hb_000329_020--Hb_000331_640 Hb_019516_100 Hb_019516_100 Hb_000329_020--Hb_019516_100 Hb_172221_010--Hb_000042_260 Hb_172221_010--Hb_026398_010 Hb_172221_010--Hb_002909_130 Hb_012395_130 Hb_012395_130 Hb_172221_010--Hb_012395_130 Hb_002588_010 Hb_002588_010 Hb_172221_010--Hb_002588_010 Hb_000042_260--Hb_019516_100 Hb_000042_260--Hb_002588_010 Hb_000042_260--Hb_002909_130 Hb_000042_260--Hb_026398_010 Hb_011311_010 Hb_011311_010 Hb_026398_010--Hb_011311_010 Hb_002660_030 Hb_002660_030 Hb_026398_010--Hb_002660_030 Hb_026398_010--Hb_002588_010 Hb_001085_270 Hb_001085_270 Hb_002909_130--Hb_001085_270 Hb_001158_230 Hb_001158_230 Hb_002909_130--Hb_001158_230 Hb_008948_050 Hb_008948_050 Hb_002909_130--Hb_008948_050 Hb_000331_640--Hb_002909_130 Hb_000331_640--Hb_000042_260 Hb_009880_010 Hb_009880_010 Hb_000331_640--Hb_009880_010 Hb_000062_650 Hb_000062_650 Hb_000331_640--Hb_000062_650 Hb_002811_080 Hb_002811_080 Hb_000331_640--Hb_002811_080 Hb_019516_100--Hb_002588_010 Hb_019516_100--Hb_001158_230 Hb_000062_390 Hb_000062_390 Hb_019516_100--Hb_000062_390 Hb_019516_100--Hb_172221_010 Hb_009384_020 Hb_009384_020 Hb_019516_100--Hb_009384_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
45.1868 24.0837 31.868 31.0656 35.6964 58.6057
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
120.103 294.701 53.2693 65.6403 30.0545

CAGE analysis