Hb_000329_030

Information

Type -
Description -
Location Contig329: 17652-20622
Sequence    

Annotation

kegg
ID rcu:RCOM_0835850
description hypothetical protein
nr
ID XP_012083590.1
description PREDICTED: uncharacterized protein LOC105643133 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JXU4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14537 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34481: 16701-16867 , PASA_asmbl_34482: 17657-18165
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000329_030 0.0 - - PREDICTED: uncharacterized protein LOC105643133 isoform X1 [Jatropha curcas]
2 Hb_009557_070 0.055425524 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002774_060 0.0561658927 - - PREDICTED: uncharacterized protein LOC105630599 isoform X2 [Jatropha curcas]
4 Hb_000656_040 0.0624609886 - - PREDICTED: 25.3 kDa vesicle transport protein [Jatropha curcas]
5 Hb_000045_090 0.0635895164 - - PREDICTED: syntaxin-31 [Jatropha curcas]
6 Hb_143398_010 0.0685083689 - - PREDICTED: peter Pan-like protein [Jatropha curcas]
7 Hb_000579_140 0.0685127751 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000103_560 0.0694064806 - - ADP-ribosylation factor, putative [Ricinus communis]
9 Hb_004800_230 0.0703976463 - - PREDICTED: MIP18 family protein At1g68310 [Jatropha curcas]
10 Hb_007416_280 0.0708463627 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003092_040 0.0709703499 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 isoform X2 [Pyrus x bretschneideri]
12 Hb_000529_190 0.0716371027 - - PREDICTED: magnesium-dependent phosphatase 1-like [Jatropha curcas]
13 Hb_000815_040 0.0718283044 transcription factor TF Family: M-type hypothetical protein JCGZ_15623 [Jatropha curcas]
14 Hb_000926_250 0.072230268 - - hypothetical protein POPTR_0011s08930g [Populus trichocarpa]
15 Hb_010180_010 0.0751145863 - - PREDICTED: uncharacterized protein LOC105631104 [Jatropha curcas]
16 Hb_032208_090 0.0757911148 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit [Jatropha curcas]
17 Hb_003126_050 0.0758237544 - - PREDICTED: cell cycle checkpoint protein RAD17 isoform X1 [Jatropha curcas]
18 Hb_002078_150 0.0766191895 - - protein with unknown function [Ricinus communis]
19 Hb_001604_080 0.0768534385 - - PREDICTED: uncharacterized protein LOC105638437 [Jatropha curcas]
20 Hb_011689_080 0.0777351065 - - PREDICTED: uncharacterized protein LOC105631867 [Jatropha curcas]

Gene co-expression network

sample Hb_000329_030 Hb_000329_030 Hb_009557_070 Hb_009557_070 Hb_000329_030--Hb_009557_070 Hb_002774_060 Hb_002774_060 Hb_000329_030--Hb_002774_060 Hb_000656_040 Hb_000656_040 Hb_000329_030--Hb_000656_040 Hb_000045_090 Hb_000045_090 Hb_000329_030--Hb_000045_090 Hb_143398_010 Hb_143398_010 Hb_000329_030--Hb_143398_010 Hb_000579_140 Hb_000579_140 Hb_000329_030--Hb_000579_140 Hb_009557_070--Hb_000045_090 Hb_009557_070--Hb_143398_010 Hb_007416_280 Hb_007416_280 Hb_009557_070--Hb_007416_280 Hb_003175_010 Hb_003175_010 Hb_009557_070--Hb_003175_010 Hb_003929_250 Hb_003929_250 Hb_009557_070--Hb_003929_250 Hb_002774_060--Hb_000045_090 Hb_002774_060--Hb_000656_040 Hb_004324_310 Hb_004324_310 Hb_002774_060--Hb_004324_310 Hb_010172_080 Hb_010172_080 Hb_002774_060--Hb_010172_080 Hb_032208_090 Hb_032208_090 Hb_002774_060--Hb_032208_090 Hb_000656_040--Hb_032208_090 Hb_000656_040--Hb_000579_140 Hb_000656_040--Hb_000045_090 Hb_002998_060 Hb_002998_060 Hb_000656_040--Hb_002998_060 Hb_004545_060 Hb_004545_060 Hb_000045_090--Hb_004545_060 Hb_000045_090--Hb_143398_010 Hb_005686_060 Hb_005686_060 Hb_000045_090--Hb_005686_060 Hb_002271_020 Hb_002271_020 Hb_143398_010--Hb_002271_020 Hb_010180_010 Hb_010180_010 Hb_143398_010--Hb_010180_010 Hb_002473_130 Hb_002473_130 Hb_143398_010--Hb_002473_130 Hb_000579_140--Hb_032208_090 Hb_003092_040 Hb_003092_040 Hb_000579_140--Hb_003092_040 Hb_001818_090 Hb_001818_090 Hb_000579_140--Hb_001818_090 Hb_000579_140--Hb_007416_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.17677 2.77776 4.67545 6.18307 6.11009 9.87526
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.67999 9.83793 7.97414 5.15225 2.28087

CAGE analysis