Hb_000329_060

Information

Type -
Description -
Location Contig329: 30410-35694
Sequence    

Annotation

kegg
ID rcu:RCOM_1611380
description 3-phosphoshikimate 1-carboxyvinyltransferase, putative (EC:2.5.1.19)
nr
ID AFY09699.1
description chloroplast 5-enolpyruvylshikimate 3-phosphate synthase [Hevea brasiliensis]
swissprot
ID P05466
description 3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic OS=Arabidopsis thaliana GN=At2g45300 PE=2 SV=3
trembl
ID A0A0A6Z9T0
description 3-phosphoshikimate 1-carboxyvinyltransferase OS=Hevea brasiliensis GN=EPSPs PE=3 SV=1
Gene Ontology
ID GO:0005829
description 3-phosphoshikimate 1-carboxyvinyltransferase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34483: 30760-35370
cDNA
(Sanger)
(ID:Location)		 027_K10.ab1: 34381-35340

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000329_060 0.0 - - chloroplast 5-enolpyruvylshikimate 3-phosphate synthase [Hevea brasiliensis]
2 Hb_000556_120 0.055497309 - - Spastin, putative [Ricinus communis]
3 Hb_000381_120 0.0673379439 - - PREDICTED: uncharacterized protein LOC105648175 [Jatropha curcas]
4 Hb_000140_290 0.0687051583 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X1 [Populus euphratica]
5 Hb_005634_010 0.0688293717 - - WD-repeat protein, putative [Ricinus communis]
6 Hb_005357_160 0.0704231733 - - PREDICTED: probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3B [Jatropha curcas]
7 Hb_000836_460 0.0733195455 - - PREDICTED: uncharacterized protein LOC105628435 [Jatropha curcas]
8 Hb_001301_150 0.0770178781 - - PREDICTED: UPF0136 membrane protein At2g26240 [Vitis vinifera]
9 Hb_001828_180 0.0803401795 - - 26S proteasome regulatory subunit S3, putative [Ricinus communis]
10 Hb_073973_100 0.0803987403 - - PREDICTED: uncharacterized protein LOC105638910 [Jatropha curcas]
11 Hb_005147_030 0.0806831768 - - hypothetical protein POPTR_0004s23390g [Populus trichocarpa]
12 Hb_000138_100 0.0810135523 - - bifunctional purine biosynthesis protein, putative [Ricinus communis]
13 Hb_000120_370 0.0818071692 - - type 2 diacylglycerol acyltransferase [Ricinus communis]
14 Hb_002026_150 0.0851487485 transcription factor TF Family: SNF2 PREDICTED: DNA repair helicase XPB1 isoform X1 [Jatropha curcas]
15 Hb_011674_020 0.0854201119 - - PREDICTED: NEDD8-activating enzyme E1 regulatory subunit-like [Jatropha curcas]
16 Hb_000111_320 0.08615674 transcription factor TF Family: bZIP Transcription factor HBP-1b(c1), putative [Ricinus communis]
17 Hb_002044_150 0.0876547707 - - PREDICTED: A/G-specific adenine DNA glycosylase isoform X1 [Jatropha curcas]
18 Hb_002968_080 0.0876662779 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 5 [Jatropha curcas]
19 Hb_004319_080 0.0882133084 - - PREDICTED: GPI ethanolamine phosphate transferase 1 [Jatropha curcas]
20 Hb_002169_050 0.0882449877 - - PREDICTED: inositol 1,3,4-trisphosphate 5/6-kinase 4 [Jatropha curcas]

Gene co-expression network

sample Hb_000329_060 Hb_000329_060 Hb_000556_120 Hb_000556_120 Hb_000329_060--Hb_000556_120 Hb_000381_120 Hb_000381_120 Hb_000329_060--Hb_000381_120 Hb_000140_290 Hb_000140_290 Hb_000329_060--Hb_000140_290 Hb_005634_010 Hb_005634_010 Hb_000329_060--Hb_005634_010 Hb_005357_160 Hb_005357_160 Hb_000329_060--Hb_005357_160 Hb_000836_460 Hb_000836_460 Hb_000329_060--Hb_000836_460 Hb_000556_120--Hb_005634_010 Hb_000556_120--Hb_000140_290 Hb_001876_050 Hb_001876_050 Hb_000556_120--Hb_001876_050 Hb_004324_130 Hb_004324_130 Hb_000556_120--Hb_004324_130 Hb_001252_120 Hb_001252_120 Hb_000556_120--Hb_001252_120 Hb_001828_150 Hb_001828_150 Hb_000381_120--Hb_001828_150 Hb_000381_120--Hb_000556_120 Hb_000640_170 Hb_000640_170 Hb_000381_120--Hb_000640_170 Hb_000417_130 Hb_000417_130 Hb_000381_120--Hb_000417_130 Hb_009898_050 Hb_009898_050 Hb_000381_120--Hb_009898_050 Hb_000140_290--Hb_005634_010 Hb_010142_020 Hb_010142_020 Hb_000140_290--Hb_010142_020 Hb_001500_140 Hb_001500_140 Hb_000140_290--Hb_001500_140 Hb_093458_040 Hb_093458_040 Hb_000140_290--Hb_093458_040 Hb_013726_090 Hb_013726_090 Hb_000140_290--Hb_013726_090 Hb_000011_060 Hb_000011_060 Hb_005634_010--Hb_000011_060 Hb_005634_010--Hb_000836_460 Hb_003544_060 Hb_003544_060 Hb_005634_010--Hb_003544_060 Hb_011214_090 Hb_011214_090 Hb_005357_160--Hb_011214_090 Hb_000138_100 Hb_000138_100 Hb_005357_160--Hb_000138_100 Hb_005357_160--Hb_013726_090 Hb_004846_220 Hb_004846_220 Hb_005357_160--Hb_004846_220 Hb_000053_040 Hb_000053_040 Hb_005357_160--Hb_000053_040 Hb_000258_110 Hb_000258_110 Hb_000836_460--Hb_000258_110 Hb_000836_460--Hb_003544_060 Hb_004586_220 Hb_004586_220 Hb_000836_460--Hb_004586_220 Hb_003020_100 Hb_003020_100 Hb_000836_460--Hb_003020_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.7406 22.159 35.518 46.983 31.6264 28.9327
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
39.7374 27.8885 32.1081 62.9562 33.2567

CAGE analysis