Hb_000329_090

Information

Type -
Description -
Location Contig329: 43845-47500
Sequence    

Annotation

kegg
ID rcu:RCOM_1611220
description arginase, putative (EC:3.5.3.1)
nr
ID XP_002511686.1
description arginase, putative [Ricinus communis]
swissprot
ID P46637
description Arginase 1, mitochondrial OS=Arabidopsis thaliana GN=ARGAH1 PE=2 SV=1
trembl
ID B9RD97
description Arginase, putative OS=Ricinus communis GN=RCOM_1611220 PE=3 SV=1
Gene Ontology
ID GO:0005739
description arginase mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34488: 43698-47707 , PASA_asmbl_34489: 43698-47500
cDNA
(Sanger)
(ID:Location)		 002_L10.ab1: 44909-47707

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000329_090 0.0 - - arginase, putative [Ricinus communis]
2 Hb_000743_040 0.0430198631 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
3 Hb_000714_050 0.0643060032 - - PREDICTED: pentatricopeptide repeat-containing protein At2g16880-like [Jatropha curcas]
4 Hb_000567_050 0.0677001187 - - PREDICTED: UBP1-associated protein 2C [Jatropha curcas]
5 Hb_000320_200 0.068312501 - - PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog [Jatropha curcas]
6 Hb_001235_200 0.0692050264 - - conserved hypothetical protein [Ricinus communis]
7 Hb_010381_060 0.07007991 - - DEAD-box ATP-dependent RNA helicase 20 -like protein [Gossypium arboreum]
8 Hb_028487_110 0.0714837294 - - PREDICTED: phosphoglucomutase, cytoplasmic [Jatropha curcas]
9 Hb_000023_190 0.0756251897 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
10 Hb_000600_070 0.0756461529 - - PREDICTED: leucine aminopeptidase 1-like [Jatropha curcas]
11 Hb_002042_140 0.0759051574 - - PREDICTED: uncharacterized protein LOC105647570 [Jatropha curcas]
12 Hb_000072_350 0.0788280985 - - PREDICTED: WPP domain-interacting tail-anchored protein 1 [Jatropha curcas]
13 Hb_003581_120 0.0790272512 - - PREDICTED: uncharacterized protein LOC105649777 [Jatropha curcas]
14 Hb_003464_020 0.0792880917 - - srpk, putative [Ricinus communis]
15 Hb_000160_290 0.0800140628 - - unnamed protein product [Vitis vinifera]
16 Hb_000059_150 0.081667979 - - Polynucleotidyl transferase, ribonuclease H-like superfamily protein isoform 2 [Theobroma cacao]
17 Hb_002477_130 0.082297727 - - conserved hypothetical protein [Ricinus communis]
18 Hb_016898_010 0.0826862967 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
19 Hb_000035_040 0.0837103506 transcription factor TF Family: PHD PREDICTED: CHD3-type chromatin-remodeling factor PICKLE isoform X1 [Jatropha curcas]
20 Hb_002960_160 0.0837152957 - - PREDICTED: vacuolar protein sorting-associated protein 35B isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000329_090 Hb_000329_090 Hb_000743_040 Hb_000743_040 Hb_000329_090--Hb_000743_040 Hb_000714_050 Hb_000714_050 Hb_000329_090--Hb_000714_050 Hb_000567_050 Hb_000567_050 Hb_000329_090--Hb_000567_050 Hb_000320_200 Hb_000320_200 Hb_000329_090--Hb_000320_200 Hb_001235_200 Hb_001235_200 Hb_000329_090--Hb_001235_200 Hb_010381_060 Hb_010381_060 Hb_000329_090--Hb_010381_060 Hb_000600_070 Hb_000600_070 Hb_000743_040--Hb_000600_070 Hb_003428_070 Hb_003428_070 Hb_000743_040--Hb_003428_070 Hb_000743_040--Hb_000567_050 Hb_000072_350 Hb_000072_350 Hb_000743_040--Hb_000072_350 Hb_000743_040--Hb_010381_060 Hb_000714_050--Hb_010381_060 Hb_000714_050--Hb_001235_200 Hb_000714_050--Hb_000320_200 Hb_005892_030 Hb_005892_030 Hb_000714_050--Hb_005892_030 Hb_000329_130 Hb_000329_130 Hb_000714_050--Hb_000329_130 Hb_000567_050--Hb_003428_070 Hb_000023_190 Hb_000023_190 Hb_000567_050--Hb_000023_190 Hb_000567_050--Hb_000600_070 Hb_002044_060 Hb_002044_060 Hb_000567_050--Hb_002044_060 Hb_000567_050--Hb_010381_060 Hb_001599_030 Hb_001599_030 Hb_000320_200--Hb_001599_030 Hb_002221_050 Hb_002221_050 Hb_000320_200--Hb_002221_050 Hb_000320_200--Hb_000072_350 Hb_003952_150 Hb_003952_150 Hb_000320_200--Hb_003952_150 Hb_000320_200--Hb_000743_040 Hb_001235_200--Hb_001599_030 Hb_000035_040 Hb_000035_040 Hb_001235_200--Hb_000035_040 Hb_001235_200--Hb_010381_060 Hb_001235_200--Hb_000320_200 Hb_007558_120 Hb_007558_120 Hb_001235_200--Hb_007558_120 Hb_003464_020 Hb_003464_020 Hb_010381_060--Hb_003464_020 Hb_000029_130 Hb_000029_130 Hb_010381_060--Hb_000029_130 Hb_010381_060--Hb_000023_190 Hb_009627_010 Hb_009627_010 Hb_010381_060--Hb_009627_010 Hb_010381_060--Hb_001599_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
71.1905 42.9465 19.1527 36.8113 81.7364 78.2507
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
45.7405 26.1034 29.6993 36.6868 38.2266

CAGE analysis