Hb_000329_110

Information

Type -
Description -
Location Contig329: 52790-56216
Sequence    

Annotation

kegg
ID rcu:RCOM_1611200
description hypothetical protein
nr
ID XP_012083601.1
description PREDICTED: uncharacterized protein LOC105643142 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K936
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14546 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34490: 49371-51968 , PASA_asmbl_34491: 54218-54656 , PASA_asmbl_34492: 52999-56196 , PASA_asmbl_34493: 53040-53381
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000329_110 0.0 - - PREDICTED: uncharacterized protein LOC105643142 [Jatropha curcas]
2 Hb_000805_240 0.0755587808 - - PREDICTED: uncharacterized protein C20orf24 homolog [Jatropha curcas]
3 Hb_004696_080 0.0801608818 - - PREDICTED: uncharacterized protein At1g01500-like [Populus euphratica]
4 Hb_000406_080 0.0805102493 - - PREDICTED: trafficking protein particle complex subunit 6B [Jatropha curcas]
5 Hb_000645_090 0.0813701215 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000030_030 0.082701785 - - PREDICTED: ADP-glucose phosphorylase [Jatropha curcas]
7 Hb_089032_030 0.0858963833 - - PREDICTED: 3-isopropylmalate dehydrogenase 2, chloroplastic-like [Jatropha curcas]
8 Hb_000787_020 0.085916467 - - PREDICTED: glucose-6-phosphate/phosphate translocator 1, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_000390_300 0.0873352279 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase MCC1 [Jatropha curcas]
10 Hb_003994_260 0.0878309739 - - PREDICTED: uncharacterized protein LOC105646151 [Jatropha curcas]
11 Hb_000417_040 0.0881942017 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
12 Hb_000890_150 0.088377286 - - PREDICTED: E3 ubiquitin-protein ligase Topors isoform X1 [Jatropha curcas]
13 Hb_004078_040 0.0884076973 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 [Jatropha curcas]
14 Hb_005846_040 0.0900988845 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 [Populus euphratica]
15 Hb_000016_160 0.0911057595 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48 [Jatropha curcas]
16 Hb_000414_130 0.0911125254 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
17 Hb_000430_020 0.0915389388 - - -
18 Hb_003605_090 0.0916049381 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105632419 [Jatropha curcas]
19 Hb_000359_060 0.091758285 - - PREDICTED: WD repeat-containing protein 26-like [Jatropha curcas]
20 Hb_001123_060 0.0918798628 - - PREDICTED: ALBINO3-like protein 2, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000329_110 Hb_000329_110 Hb_000805_240 Hb_000805_240 Hb_000329_110--Hb_000805_240 Hb_004696_080 Hb_004696_080 Hb_000329_110--Hb_004696_080 Hb_000406_080 Hb_000406_080 Hb_000329_110--Hb_000406_080 Hb_000645_090 Hb_000645_090 Hb_000329_110--Hb_000645_090 Hb_000030_030 Hb_000030_030 Hb_000329_110--Hb_000030_030 Hb_089032_030 Hb_089032_030 Hb_000329_110--Hb_089032_030 Hb_021068_040 Hb_021068_040 Hb_000805_240--Hb_021068_040 Hb_006615_240 Hb_006615_240 Hb_000805_240--Hb_006615_240 Hb_009615_070 Hb_009615_070 Hb_000805_240--Hb_009615_070 Hb_008071_020 Hb_008071_020 Hb_000805_240--Hb_008071_020 Hb_000805_240--Hb_004696_080 Hb_152784_010 Hb_152784_010 Hb_000805_240--Hb_152784_010 Hb_024439_010 Hb_024439_010 Hb_004696_080--Hb_024439_010 Hb_000638_250 Hb_000638_250 Hb_004696_080--Hb_000638_250 Hb_004696_080--Hb_152784_010 Hb_148121_040 Hb_148121_040 Hb_004696_080--Hb_148121_040 Hb_000291_080 Hb_000291_080 Hb_004696_080--Hb_000291_080 Hb_000417_040 Hb_000417_040 Hb_000406_080--Hb_000417_040 Hb_001225_080 Hb_001225_080 Hb_000406_080--Hb_001225_080 Hb_001057_040 Hb_001057_040 Hb_000406_080--Hb_001057_040 Hb_000406_080--Hb_000645_090 Hb_181385_010 Hb_181385_010 Hb_000406_080--Hb_181385_010 Hb_002481_080 Hb_002481_080 Hb_000645_090--Hb_002481_080 Hb_001377_510 Hb_001377_510 Hb_000645_090--Hb_001377_510 Hb_155159_020 Hb_155159_020 Hb_000645_090--Hb_155159_020 Hb_022115_020 Hb_022115_020 Hb_000645_090--Hb_022115_020 Hb_000477_060 Hb_000477_060 Hb_000645_090--Hb_000477_060 Hb_005188_080 Hb_005188_080 Hb_000645_090--Hb_005188_080 Hb_005846_040 Hb_005846_040 Hb_000030_030--Hb_005846_040 Hb_001703_060 Hb_001703_060 Hb_000030_030--Hb_001703_060 Hb_003502_060 Hb_003502_060 Hb_000030_030--Hb_003502_060 Hb_002232_410 Hb_002232_410 Hb_000030_030--Hb_002232_410 Hb_003151_040 Hb_003151_040 Hb_000030_030--Hb_003151_040 Hb_168978_010 Hb_168978_010 Hb_000030_030--Hb_168978_010 Hb_010812_120 Hb_010812_120 Hb_089032_030--Hb_010812_120 Hb_089032_030--Hb_003502_060 Hb_003349_090 Hb_003349_090 Hb_089032_030--Hb_003349_090 Hb_089032_030--Hb_009615_070 Hb_010423_030 Hb_010423_030 Hb_089032_030--Hb_010423_030 Hb_001545_170 Hb_001545_170 Hb_089032_030--Hb_001545_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.9717 29.9426 21.7708 56.2156 26.6752 23.8497
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
44.8117 67.1435 49.7486 39.5179 20.9834

CAGE analysis