Hb_000329_120

Information

Type -
Description -
Location Contig329: 57431-58069
Sequence    

Annotation

kegg
ID rcu:RCOM_1611190
description 21 kDa protein precursor, putative
nr
ID XP_002511683.1
description 21 kDa protein precursor, putative [Ricinus communis]
swissprot
ID P17407
description 21 kDa protein OS=Daucus carota PE=2 SV=1
trembl
ID B9RD94
description 21 kDa protein, putative OS=Ricinus communis GN=RCOM_1611190 PE=4 SV=1
Gene Ontology
ID GO:0004857
description 21 kda protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000329_120 0.0 - - 21 kDa protein precursor, putative [Ricinus communis]
2 Hb_001232_070 0.0354112932 - - conserved hypothetical protein [Ricinus communis]
3 Hb_085682_010 0.0364277004 - - -
4 Hb_002391_340 0.0489999768 - - RNA polymerase II largest subunit [Liriodendron tulipifera]
5 Hb_006483_040 0.0503088246 - - PREDICTED: uncharacterized protein LOC105639715 [Jatropha curcas]
6 Hb_004807_010 0.0566881439 - - PREDICTED: auxin-induced protein 15A-like [Jatropha curcas]
7 Hb_005839_040 0.0584782761 - - hypothetical protein POPTR_0019s08420g [Populus trichocarpa]
8 Hb_154038_010 0.0593633879 - - cytochrome P450, putative [Ricinus communis]
9 Hb_009233_020 0.0614493784 - - PREDICTED: 3-ketoacyl-CoA synthase 12 [Jatropha curcas]
10 Hb_001472_150 0.0633035765 - - PREDICTED: cytochrome P450 86A7 [Jatropha curcas]
11 Hb_158001_010 0.0660220788 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
12 Hb_003151_020 0.0693200715 - - Ankyrin repeat family protein, putative [Theobroma cacao]
13 Hb_001345_050 0.0695444868 - - hypothetical protein POPTR_0014s14480g [Populus trichocarpa]
14 Hb_072771_010 0.0695973319 - - Endo-1,4-beta-xylanase C precursor, putative [Ricinus communis]
15 Hb_065774_010 0.0728266639 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP16-3, chloroplastic [Jatropha curcas]
16 Hb_008453_050 0.074290352 - - PREDICTED: peroxidase 64 [Jatropha curcas]
17 Hb_012098_120 0.0753933003 - - PREDICTED: putative elongation of fatty acids protein DDB_G0272012 [Jatropha curcas]
18 Hb_007317_030 0.0764006675 - - -
19 Hb_000046_400 0.0783744281 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004837_010 0.0784252607 - - PREDICTED: aldehyde dehydrogenase family 3 member F1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000329_120 Hb_000329_120 Hb_001232_070 Hb_001232_070 Hb_000329_120--Hb_001232_070 Hb_085682_010 Hb_085682_010 Hb_000329_120--Hb_085682_010 Hb_002391_340 Hb_002391_340 Hb_000329_120--Hb_002391_340 Hb_006483_040 Hb_006483_040 Hb_000329_120--Hb_006483_040 Hb_004807_010 Hb_004807_010 Hb_000329_120--Hb_004807_010 Hb_005839_040 Hb_005839_040 Hb_000329_120--Hb_005839_040 Hb_001232_070--Hb_002391_340 Hb_001232_070--Hb_006483_040 Hb_001472_150 Hb_001472_150 Hb_001232_070--Hb_001472_150 Hb_065774_010 Hb_065774_010 Hb_001232_070--Hb_065774_010 Hb_001437_170 Hb_001437_170 Hb_001232_070--Hb_001437_170 Hb_158001_010 Hb_158001_010 Hb_085682_010--Hb_158001_010 Hb_009233_020 Hb_009233_020 Hb_085682_010--Hb_009233_020 Hb_004837_010 Hb_004837_010 Hb_085682_010--Hb_004837_010 Hb_001507_060 Hb_001507_060 Hb_085682_010--Hb_001507_060 Hb_000077_020 Hb_000077_020 Hb_085682_010--Hb_000077_020 Hb_002391_340--Hb_065774_010 Hb_002391_340--Hb_001437_170 Hb_002391_340--Hb_006483_040 Hb_002391_340--Hb_001472_150 Hb_096907_010 Hb_096907_010 Hb_002391_340--Hb_096907_010 Hb_154038_010 Hb_154038_010 Hb_006483_040--Hb_154038_010 Hb_064445_020 Hb_064445_020 Hb_006483_040--Hb_064445_020 Hb_008453_050 Hb_008453_050 Hb_006483_040--Hb_008453_050 Hb_006483_040--Hb_001472_150 Hb_012098_120 Hb_012098_120 Hb_004807_010--Hb_012098_120 Hb_004807_010--Hb_005839_040 Hb_185811_010 Hb_185811_010 Hb_004807_010--Hb_185811_010 Hb_000803_080 Hb_000803_080 Hb_004807_010--Hb_000803_080 Hb_004807_010--Hb_009233_020 Hb_005839_040--Hb_154038_010 Hb_005839_040--Hb_006483_040 Hb_005839_040--Hb_008453_050 Hb_072771_010 Hb_072771_010 Hb_005839_040--Hb_072771_010 Hb_001345_050 Hb_001345_050 Hb_005839_040--Hb_001345_050 Hb_005839_040--Hb_001472_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0603452 0.0743539 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.141396

CAGE analysis