Hb_000329_130

Information

Type -
Description -
Location Contig329: 58747-69640
Sequence    

Annotation

kegg
ID rcu:RCOM_1611170
description beta-tubulin cofactor d, putative
nr
ID XP_002511682.1
description beta-tubulin cofactor d, putative [Ricinus communis]
swissprot
ID Q8L5R3
description Tubulin-folding cofactor D OS=Arabidopsis thaliana GN=TFCD PE=2 SV=1
trembl
ID B9RD93
description Beta-tubulin cofactor d, putative OS=Ricinus communis GN=RCOM_1611170 PE=4 SV=1
Gene Ontology
ID GO:0005829
description tubulin-folding cofactor d

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34495: 58863-59696 , PASA_asmbl_34496: 59762-60297 , PASA_asmbl_34497: 61342-63505 , PASA_asmbl_34498: 63701-69753 , PASA_asmbl_34499: 64640-64737
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000329_130 0.0 - - beta-tubulin cofactor d, putative [Ricinus communis]
2 Hb_147737_010 0.0489102324 - - PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Jatropha curcas]
3 Hb_017895_020 0.0531297769 - - Vacuolar protein sorting protein, putative [Ricinus communis]
4 Hb_010315_090 0.0569712844 - - suppressor of ty, putative [Ricinus communis]
5 Hb_140049_020 0.0584945852 - - PREDICTED: cell division cycle protein 73 [Jatropha curcas]
6 Hb_007558_120 0.0604291395 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
7 Hb_009151_020 0.0607469857 - - PREDICTED: DNA polymerase delta catalytic subunit [Jatropha curcas]
8 Hb_000796_190 0.0608480469 - - hypothetical protein F383_31148 [Gossypium arboreum]
9 Hb_002221_050 0.0619402156 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP65 isoform X1 [Jatropha curcas]
10 Hb_000035_040 0.0633889384 transcription factor TF Family: PHD PREDICTED: CHD3-type chromatin-remodeling factor PICKLE isoform X1 [Jatropha curcas]
11 Hb_005892_030 0.0636414586 - - PREDICTED: splicing factor U2af large subunit A [Jatropha curcas]
12 Hb_015026_050 0.064108356 - - XPA-binding protein, putative [Ricinus communis]
13 Hb_000567_010 0.0649155965 - - PREDICTED: uncharacterized protein LOC105631110 [Jatropha curcas]
14 Hb_000714_050 0.0649953187 - - PREDICTED: pentatricopeptide repeat-containing protein At2g16880-like [Jatropha curcas]
15 Hb_020665_030 0.0654136726 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000417_160 0.0654592321 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g45780 [Jatropha curcas]
17 Hb_010193_050 0.0674886534 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001771_120 0.0675744487 - - K+ transport growth defect-like protein [Hevea brasiliensis]
19 Hb_000343_210 0.0676662731 - - ran-binding protein, putative [Ricinus communis]
20 Hb_000914_080 0.0682201994 - - ubiquitin-protein ligase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000329_130 Hb_000329_130 Hb_147737_010 Hb_147737_010 Hb_000329_130--Hb_147737_010 Hb_017895_020 Hb_017895_020 Hb_000329_130--Hb_017895_020 Hb_010315_090 Hb_010315_090 Hb_000329_130--Hb_010315_090 Hb_140049_020 Hb_140049_020 Hb_000329_130--Hb_140049_020 Hb_007558_120 Hb_007558_120 Hb_000329_130--Hb_007558_120 Hb_009151_020 Hb_009151_020 Hb_000329_130--Hb_009151_020 Hb_015026_050 Hb_015026_050 Hb_147737_010--Hb_015026_050 Hb_000343_210 Hb_000343_210 Hb_147737_010--Hb_000343_210 Hb_000567_010 Hb_000567_010 Hb_147737_010--Hb_000567_010 Hb_003124_130 Hb_003124_130 Hb_147737_010--Hb_003124_130 Hb_000531_090 Hb_000531_090 Hb_147737_010--Hb_000531_090 Hb_002675_040 Hb_002675_040 Hb_017895_020--Hb_002675_040 Hb_001900_120 Hb_001900_120 Hb_017895_020--Hb_001900_120 Hb_008725_130 Hb_008725_130 Hb_017895_020--Hb_008725_130 Hb_028872_120 Hb_028872_120 Hb_017895_020--Hb_028872_120 Hb_000914_080 Hb_000914_080 Hb_017895_020--Hb_000914_080 Hb_001417_050 Hb_001417_050 Hb_010315_090--Hb_001417_050 Hb_001493_040 Hb_001493_040 Hb_010315_090--Hb_001493_040 Hb_019153_020 Hb_019153_020 Hb_010315_090--Hb_019153_020 Hb_004884_010 Hb_004884_010 Hb_010315_090--Hb_004884_010 Hb_010315_090--Hb_140049_020 Hb_000313_340 Hb_000313_340 Hb_140049_020--Hb_000313_340 Hb_140049_020--Hb_019153_020 Hb_005539_190 Hb_005539_190 Hb_140049_020--Hb_005539_190 Hb_007229_040 Hb_007229_040 Hb_140049_020--Hb_007229_040 Hb_000363_130 Hb_000363_130 Hb_140049_020--Hb_000363_130 Hb_000796_190 Hb_000796_190 Hb_007558_120--Hb_000796_190 Hb_003680_230 Hb_003680_230 Hb_007558_120--Hb_003680_230 Hb_006816_050 Hb_006816_050 Hb_007558_120--Hb_006816_050 Hb_004635_050 Hb_004635_050 Hb_007558_120--Hb_004635_050 Hb_002042_140 Hb_002042_140 Hb_007558_120--Hb_002042_140 Hb_000347_570 Hb_000347_570 Hb_009151_020--Hb_000347_570 Hb_020665_030 Hb_020665_030 Hb_009151_020--Hb_020665_030 Hb_001178_150 Hb_001178_150 Hb_009151_020--Hb_001178_150 Hb_001473_090 Hb_001473_090 Hb_009151_020--Hb_001473_090 Hb_009151_020--Hb_000914_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.7988 20.5213 14.3647 10.2835 33.27 32.7762
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.6974 8.74654 10.6885 14.4802 11.979

CAGE analysis