Hb_000329_230

Information

Type -
Description -
Location Contig329: 138737-140248
Sequence    

Annotation

kegg
ID pop:POPTR_0002s14580g
description POPTRDRAFT_552022; hypothetical protein
nr
ID XP_012083614.1
description PREDICTED: uncharacterized protein LOC105643152 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9GPD3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s14580g PE=4 SV=2
Gene Ontology
ID GO:0005777
description PREDICTED: uncharacterized protein LOC105643152

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000329_230 0.0 - - PREDICTED: uncharacterized protein LOC105643152 [Jatropha curcas]
2 Hb_001473_160 0.0564048742 - - Vesicle-associated membrane protein, putative [Ricinus communis]
3 Hb_000072_120 0.0606114607 - - serine/threonine protein kinase, putative [Ricinus communis]
4 Hb_003617_020 0.0655905354 - - PREDICTED: uncharacterized protein LOC105638179 [Jatropha curcas]
5 Hb_000390_250 0.0673462745 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 1 [Jatropha curcas]
6 Hb_003906_200 0.0682857649 - - PREDICTED: zinc finger CCCH domain-containing protein 48 [Jatropha curcas]
7 Hb_001674_030 0.0717589779 - - PREDICTED: BTB/POZ domain-containing protein At2g24240 [Jatropha curcas]
8 Hb_002492_010 0.075063053 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 2-like [Populus euphratica]
9 Hb_002028_210 0.0775513403 - - PREDICTED: uncharacterized protein LOC105638038 [Jatropha curcas]
10 Hb_001717_010 0.0803557594 - - F-box and wd40 domain protein, putative [Ricinus communis]
11 Hb_001716_020 0.0815152838 - - hydrolase, putative [Ricinus communis]
12 Hb_000487_270 0.0818801796 - - hypothetical protein JCGZ_22651 [Jatropha curcas]
13 Hb_000322_070 0.0819555967 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1 [Jatropha curcas]
14 Hb_000009_400 0.0837807847 - - PREDICTED: BTB/POZ domain-containing protein At3g50780 [Jatropha curcas]
15 Hb_007017_040 0.0839775697 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit [Jatropha curcas]
16 Hb_012395_170 0.0841591434 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002110_080 0.0846335598 - - FH interacting protein 1 [Theobroma cacao]
18 Hb_000046_570 0.084925356 - - hypothetical protein JCGZ_01998 [Jatropha curcas]
19 Hb_001679_050 0.0858078949 - - PREDICTED: exocyst complex component EXO84B [Jatropha curcas]
20 Hb_000069_310 0.0858907749 - - ubiquitin ligase [Cucumis melo subsp. melo]

Gene co-expression network

sample Hb_000329_230 Hb_000329_230 Hb_001473_160 Hb_001473_160 Hb_000329_230--Hb_001473_160 Hb_000072_120 Hb_000072_120 Hb_000329_230--Hb_000072_120 Hb_003617_020 Hb_003617_020 Hb_000329_230--Hb_003617_020 Hb_000390_250 Hb_000390_250 Hb_000329_230--Hb_000390_250 Hb_003906_200 Hb_003906_200 Hb_000329_230--Hb_003906_200 Hb_001674_030 Hb_001674_030 Hb_000329_230--Hb_001674_030 Hb_001473_160--Hb_000072_120 Hb_000637_110 Hb_000637_110 Hb_001473_160--Hb_000637_110 Hb_002028_210 Hb_002028_210 Hb_001473_160--Hb_002028_210 Hb_001473_160--Hb_003906_200 Hb_093458_040 Hb_093458_040 Hb_001473_160--Hb_093458_040 Hb_000072_120--Hb_003906_200 Hb_000072_120--Hb_001674_030 Hb_004030_080 Hb_004030_080 Hb_000072_120--Hb_004030_080 Hb_001679_050 Hb_001679_050 Hb_000072_120--Hb_001679_050 Hb_001357_040 Hb_001357_040 Hb_003617_020--Hb_001357_040 Hb_012395_170 Hb_012395_170 Hb_003617_020--Hb_012395_170 Hb_005276_060 Hb_005276_060 Hb_003617_020--Hb_005276_060 Hb_000322_070 Hb_000322_070 Hb_003617_020--Hb_000322_070 Hb_003617_020--Hb_000072_120 Hb_000046_570 Hb_000046_570 Hb_000390_250--Hb_000046_570 Hb_001863_360 Hb_001863_360 Hb_000390_250--Hb_001863_360 Hb_005381_020 Hb_005381_020 Hb_000390_250--Hb_005381_020 Hb_003929_170 Hb_003929_170 Hb_000390_250--Hb_003929_170 Hb_001366_090 Hb_001366_090 Hb_000390_250--Hb_001366_090 Hb_112198_010 Hb_112198_010 Hb_003906_200--Hb_112198_010 Hb_002492_010 Hb_002492_010 Hb_003906_200--Hb_002492_010 Hb_004143_100 Hb_004143_100 Hb_003906_200--Hb_004143_100 Hb_003544_060 Hb_003544_060 Hb_003906_200--Hb_003544_060 Hb_007850_090 Hb_007850_090 Hb_001674_030--Hb_007850_090 Hb_001674_030--Hb_003906_200 Hb_000009_500 Hb_000009_500 Hb_001674_030--Hb_000009_500 Hb_000402_230 Hb_000402_230 Hb_001674_030--Hb_000402_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.40189 6.85044 4.48516 8.82523 3.33709 4.57252
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.40384 4.60113 5.17003 4.13916 4.27956

CAGE analysis