Hb_000329_240

Information

Type transcription factor
Description TF Family: PLATZ
Location Contig329: 145482-146665
Sequence    

Annotation

kegg
ID rcu:RCOM_1610740
description zinc ion binding protein, putative
nr
ID XP_002511669.1
description zinc ion binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RD80
description Zinc ion binding protein, putative OS=Ricinus communis GN=RCOM_1610740 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000329_240 0.0 transcription factor TF Family: PLATZ zinc ion binding protein, putative [Ricinus communis]
2 Hb_073174_010 0.0002374581 - - PREDICTED: MLP-like protein 328 [Jatropha curcas]
3 Hb_011444_050 0.0005149517 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
4 Hb_163720_010 0.0009685383 - - PREDICTED: uncharacterized protein LOC105636883 [Jatropha curcas]
5 Hb_001900_040 0.0025474542 - - PREDICTED: uncharacterized protein LOC105049010 [Elaeis guineensis]
6 Hb_000518_010 0.0026699911 transcription factor TF Family: MYB hypothetical protein POPTR_0010s17300g [Populus trichocarpa]
7 Hb_188247_020 0.0028851474 - - hypothetical protein, partial [Cecembia lonarensis]
8 Hb_150093_010 0.0031115512 - - putative polyprotein [Oryza sativa Japonica Group]
9 Hb_002326_160 0.0032860338 - - hypothetical protein JCGZ_04332 [Jatropha curcas]
10 Hb_000696_180 0.0035169399 - - cysteine protease, putative [Ricinus communis]
11 Hb_001240_030 0.0036551947 - - PREDICTED: uncharacterized protein LOC105634453 [Jatropha curcas]
12 Hb_159542_010 0.0049666894 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
13 Hb_000938_010 0.0074863634 - - polyprotein [Oryza australiensis]
14 Hb_071079_030 0.0087380829 transcription factor TF Family: MYB-related PREDICTED: transcription factor TRY-like [Populus euphratica]
15 Hb_001031_070 0.0091260158 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase CES101 [Jatropha curcas]
16 Hb_000441_240 0.0093178608 - - hypothetical protein ZEAMMB73_005804 [Zea mays]
17 Hb_003687_050 0.0098619542 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002596_100 0.0100001234 - - -
19 Hb_001031_100 0.0110532362 - - -
20 Hb_000724_010 0.0115689537 - - PREDICTED: uncharacterized protein LOC105134348 [Populus euphratica]

Gene co-expression network

sample Hb_000329_240 Hb_000329_240 Hb_073174_010 Hb_073174_010 Hb_000329_240--Hb_073174_010 Hb_011444_050 Hb_011444_050 Hb_000329_240--Hb_011444_050 Hb_163720_010 Hb_163720_010 Hb_000329_240--Hb_163720_010 Hb_001900_040 Hb_001900_040 Hb_000329_240--Hb_001900_040 Hb_000518_010 Hb_000518_010 Hb_000329_240--Hb_000518_010 Hb_188247_020 Hb_188247_020 Hb_000329_240--Hb_188247_020 Hb_073174_010--Hb_163720_010 Hb_073174_010--Hb_011444_050 Hb_073174_010--Hb_001900_040 Hb_073174_010--Hb_000518_010 Hb_073174_010--Hb_188247_020 Hb_011444_050--Hb_163720_010 Hb_000696_180 Hb_000696_180 Hb_011444_050--Hb_000696_180 Hb_011444_050--Hb_001900_040 Hb_011444_050--Hb_000518_010 Hb_163720_010--Hb_001900_040 Hb_163720_010--Hb_000518_010 Hb_163720_010--Hb_188247_020 Hb_001900_040--Hb_000518_010 Hb_001900_040--Hb_188247_020 Hb_150093_010 Hb_150093_010 Hb_001900_040--Hb_150093_010 Hb_002326_160 Hb_002326_160 Hb_001900_040--Hb_002326_160 Hb_001240_030 Hb_001240_030 Hb_001900_040--Hb_001240_030 Hb_000518_010--Hb_188247_020 Hb_000518_010--Hb_150093_010 Hb_000518_010--Hb_002326_160 Hb_000518_010--Hb_001240_030 Hb_188247_020--Hb_150093_010 Hb_188247_020--Hb_002326_160 Hb_188247_020--Hb_001240_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0354887 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0327978 0

CAGE analysis