Hb_000329_250

Information

Type -
Description -
Location Contig329: 151214-154605
Sequence    

Annotation

kegg
ID fve:101302783
description vesicle-associated protein 1-3-like
nr
ID XP_004306946.1
description PREDICTED: vesicle-associated protein 1-3 isoform X1 [Fragaria vesca subsp. vesca]
swissprot
ID Q84WW5
description Vesicle-associated protein 1-3 OS=Arabidopsis thaliana GN=PVA13 PE=2 SV=1
trembl
ID A0A067K190
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14559 PE=4 SV=1
Gene Ontology
ID GO:0005789
description vesicle-associated protein 1-3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34514: 151199-154589
cDNA
(Sanger)
(ID:Location)		 023_P14.ab1: 154258-154589

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000329_250 0.0 - - PREDICTED: vesicle-associated protein 1-3 isoform X1 [Fragaria vesca subsp. vesca]
2 Hb_000496_120 0.0953823491 - - PREDICTED: iron-sulfur protein NUBPL [Jatropha curcas]
3 Hb_006698_030 0.1078474128 - - PREDICTED: uncharacterized protein LOC105633969 [Jatropha curcas]
4 Hb_001136_010 0.114460963 - - hypothetical protein JCGZ_18294 [Jatropha curcas]
5 Hb_165669_010 0.1144786431 - - PREDICTED: MATH domain-containing protein At5g43560-like isoform X1 [Jatropha curcas]
6 Hb_000317_400 0.1194693451 transcription factor TF Family: zf-HD conserved hypothetical protein [Ricinus communis]
7 Hb_001653_020 0.1207917102 transcription factor TF Family: C2H2 rar1, putative [Ricinus communis]
8 Hb_000841_060 0.1225560415 transcription factor TF Family: ERF hypothetical protein POPTR_0015s06470g [Populus trichocarpa]
9 Hb_008695_050 0.1250089687 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001054_100 0.131740193 - - PREDICTED: uncharacterized protein LOC105634642 [Jatropha curcas]
11 Hb_000215_060 0.1318259427 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM17-2-like [Jatropha curcas]
12 Hb_005137_060 0.132046082 - - -
13 Hb_033642_080 0.1320832574 - - V-type proton ATPase subunit E [Hevea brasiliensis]
14 Hb_004543_040 0.1325803544 - - ABC transporter family protein [Hevea brasiliensis]
15 Hb_009113_050 0.1329198859 - - PREDICTED: uncharacterized protein LOC105644587 [Jatropha curcas]
16 Hb_002805_220 0.136394261 - - PREDICTED: 60S ribosomal protein L2, mitochondrial [Jatropha curcas]
17 Hb_000103_270 0.1381597463 - - PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 [Fragaria vesca subsp. vesca]
18 Hb_008173_110 0.1387077429 - - DNA binding protein, putative [Ricinus communis]
19 Hb_154826_010 0.1399828771 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
20 Hb_003098_020 0.1404934993 - - 40S ribosomal protein S5B [Hevea brasiliensis]

Gene co-expression network

sample Hb_000329_250 Hb_000329_250 Hb_000496_120 Hb_000496_120 Hb_000329_250--Hb_000496_120 Hb_006698_030 Hb_006698_030 Hb_000329_250--Hb_006698_030 Hb_001136_010 Hb_001136_010 Hb_000329_250--Hb_001136_010 Hb_165669_010 Hb_165669_010 Hb_000329_250--Hb_165669_010 Hb_000317_400 Hb_000317_400 Hb_000329_250--Hb_000317_400 Hb_001653_020 Hb_001653_020 Hb_000329_250--Hb_001653_020 Hb_000215_060 Hb_000215_060 Hb_000496_120--Hb_000215_060 Hb_091433_020 Hb_091433_020 Hb_000496_120--Hb_091433_020 Hb_033642_080 Hb_033642_080 Hb_000496_120--Hb_033642_080 Hb_004216_050 Hb_004216_050 Hb_000496_120--Hb_004216_050 Hb_001814_050 Hb_001814_050 Hb_000496_120--Hb_001814_050 Hb_005305_150 Hb_005305_150 Hb_000496_120--Hb_005305_150 Hb_003098_020 Hb_003098_020 Hb_006698_030--Hb_003098_020 Hb_000103_270 Hb_000103_270 Hb_006698_030--Hb_000103_270 Hb_005914_010 Hb_005914_010 Hb_006698_030--Hb_005914_010 Hb_000015_030 Hb_000015_030 Hb_006698_030--Hb_000015_030 Hb_006698_030--Hb_005305_150 Hb_006698_030--Hb_000496_120 Hb_001054_100 Hb_001054_100 Hb_001136_010--Hb_001054_100 Hb_000135_060 Hb_000135_060 Hb_001136_010--Hb_000135_060 Hb_001824_010 Hb_001824_010 Hb_001136_010--Hb_001824_010 Hb_001136_010--Hb_001653_020 Hb_008695_050 Hb_008695_050 Hb_001136_010--Hb_008695_050 Hb_009510_040 Hb_009510_040 Hb_165669_010--Hb_009510_040 Hb_165669_010--Hb_000496_120 Hb_165669_010--Hb_000215_060 Hb_008173_110 Hb_008173_110 Hb_165669_010--Hb_008173_110 Hb_008771_030 Hb_008771_030 Hb_165669_010--Hb_008771_030 Hb_000923_050 Hb_000923_050 Hb_000317_400--Hb_000923_050 Hb_000317_400--Hb_001136_010 Hb_000742_110 Hb_000742_110 Hb_000317_400--Hb_000742_110 Hb_000317_400--Hb_001824_010 Hb_001277_320 Hb_001277_320 Hb_000317_400--Hb_001277_320 Hb_002061_040 Hb_002061_040 Hb_001653_020--Hb_002061_040 Hb_000414_130 Hb_000414_130 Hb_001653_020--Hb_000414_130 Hb_001653_020--Hb_008173_110 Hb_003787_010 Hb_003787_010 Hb_001653_020--Hb_003787_010 Hb_001215_040 Hb_001215_040 Hb_001653_020--Hb_001215_040 Hb_003918_010 Hb_003918_010 Hb_001653_020--Hb_003918_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.42898 18.9301 6.05162 21.3904 9.79651 21.1285
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
42.6409 53.5333 26.6177 40.7396 5.23962

CAGE analysis