Hb_000329_270

Information

Type -
Description -
Location Contig329: 159986-163178
Sequence    

Annotation

kegg
ID rcu:RCOM_1610690
description hypothetical protein
nr
ID XP_012083619.1
description PREDICTED: spindle and kinetochore-associated protein 1 homolog [Jatropha curcas]
swissprot
ID Q9LZZ7
description Spindle and kinetochore-associated protein 1 homolog OS=Arabidopsis thaliana GN=At3g60660 PE=2 SV=1
trembl
ID A0A067JXW1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14562 PE=4 SV=1
Gene Ontology
ID GO:0005737
description spindle and kinetochore-associated protein 1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34515: 159852-160920 , PASA_asmbl_34516: 160921-163180
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000329_270 0.0 - - PREDICTED: spindle and kinetochore-associated protein 1 homolog [Jatropha curcas]
2 Hb_048476_100 0.1174141984 - - PREDICTED: glutathione S-transferase U9-like [Vitis vinifera]
3 Hb_003849_130 0.1227688455 - - PREDICTED: probable protein phosphatase 2C 14 [Jatropha curcas]
4 Hb_055062_020 0.1261204058 - - 60S ribosomal L35a-3 -like protein [Gossypium arboreum]
5 Hb_000027_040 0.1385708476 - - PREDICTED: uncharacterized protein LOC105636980 [Jatropha curcas]
6 Hb_000258_250 0.1385920704 - - Origin recognition complex subunit, putative [Ricinus communis]
7 Hb_000803_200 0.1443115352 - - ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis]
8 Hb_004884_160 0.1459703479 - - PREDICTED: uncharacterized protein LOC105648105 [Jatropha curcas]
9 Hb_004162_210 0.1478583149 - - Cyclin-dependent kinases regulatory subunit, putative [Ricinus communis]
10 Hb_032717_020 0.1497711236 - - PREDICTED: vacuolar protein sorting-associated protein 2 homolog 2 isoform X1 [Jatropha curcas]
11 Hb_003362_030 0.1510640471 - - hypothetical protein POPTR_0017s08440g [Populus trichocarpa]
12 Hb_000356_090 0.1515846315 - - PREDICTED: uncharacterized protein At2g38710 [Jatropha curcas]
13 Hb_110390_010 0.1517557143 - - hypothetical protein JCGZ_19741 [Jatropha curcas]
14 Hb_006816_260 0.151785286 - - hypothetical protein JCGZ_23244 [Jatropha curcas]
15 Hb_011609_020 0.1518443755 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001842_050 0.1522205894 - - PREDICTED: protein BUD31 homolog 1-like [Jatropha curcas]
17 Hb_000331_430 0.1581666948 - - PREDICTED: uncharacterized protein LOC105640242 [Jatropha curcas]
18 Hb_002374_080 0.1598600395 - - PREDICTED: chloroplast processing peptidase-like isoform X1 [Jatropha curcas]
19 Hb_000189_240 0.1612627463 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
20 Hb_139294_020 0.1618261053 - - vat protein [Cucumis melo]

Gene co-expression network

sample Hb_000329_270 Hb_000329_270 Hb_048476_100 Hb_048476_100 Hb_000329_270--Hb_048476_100 Hb_003849_130 Hb_003849_130 Hb_000329_270--Hb_003849_130 Hb_055062_020 Hb_055062_020 Hb_000329_270--Hb_055062_020 Hb_000027_040 Hb_000027_040 Hb_000329_270--Hb_000027_040 Hb_000258_250 Hb_000258_250 Hb_000329_270--Hb_000258_250 Hb_000803_200 Hb_000803_200 Hb_000329_270--Hb_000803_200 Hb_032717_020 Hb_032717_020 Hb_048476_100--Hb_032717_020 Hb_048476_100--Hb_003849_130 Hb_048476_100--Hb_000803_200 Hb_048476_100--Hb_055062_020 Hb_002374_080 Hb_002374_080 Hb_048476_100--Hb_002374_080 Hb_003849_130--Hb_055062_020 Hb_003057_090 Hb_003057_090 Hb_003849_130--Hb_003057_090 Hb_000694_040 Hb_000694_040 Hb_003849_130--Hb_000694_040 Hb_010577_030 Hb_010577_030 Hb_003849_130--Hb_010577_030 Hb_004041_020 Hb_004041_020 Hb_003849_130--Hb_004041_020 Hb_002374_570 Hb_002374_570 Hb_003849_130--Hb_002374_570 Hb_000317_390 Hb_000317_390 Hb_055062_020--Hb_000317_390 Hb_000403_060 Hb_000403_060 Hb_055062_020--Hb_000403_060 Hb_001341_150 Hb_001341_150 Hb_055062_020--Hb_001341_150 Hb_000261_140 Hb_000261_140 Hb_055062_020--Hb_000261_140 Hb_026889_030 Hb_026889_030 Hb_055062_020--Hb_026889_030 Hb_000027_040--Hb_048476_100 Hb_000340_500 Hb_000340_500 Hb_000027_040--Hb_000340_500 Hb_000027_040--Hb_032717_020 Hb_000027_040--Hb_000258_250 Hb_006671_010 Hb_006671_010 Hb_000027_040--Hb_006671_010 Hb_000189_240 Hb_000189_240 Hb_000258_250--Hb_000189_240 Hb_000731_190 Hb_000731_190 Hb_000258_250--Hb_000731_190 Hb_000356_090 Hb_000356_090 Hb_000258_250--Hb_000356_090 Hb_011609_020 Hb_011609_020 Hb_000258_250--Hb_011609_020 Hb_000258_250--Hb_055062_020 Hb_000302_140 Hb_000302_140 Hb_000258_250--Hb_000302_140 Hb_000849_130 Hb_000849_130 Hb_000803_200--Hb_000849_130 Hb_006326_040 Hb_006326_040 Hb_000803_200--Hb_006326_040 Hb_000803_200--Hb_055062_020 Hb_001511_260 Hb_001511_260 Hb_000803_200--Hb_001511_260 Hb_007113_070 Hb_007113_070 Hb_000803_200--Hb_007113_070 Hb_000045_310 Hb_000045_310 Hb_000803_200--Hb_000045_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.759187 0.155008 2.20265 1.63533 0.717201 0.889672
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.32348 2.60997 1.70154 0.97149 0.104913

CAGE analysis