Hb_000329_310

Information

Type -
Description -
Location Contig329: 188579-190783
Sequence    

Annotation

kegg
ID rcu:RCOM_1610540
description Phosphatidate cytidylyltransferase, putative (EC:2.7.7.41)
nr
ID XP_012083625.1
description PREDICTED: phosphatidate cytidylyltransferase 4, chloroplastic [Jatropha curcas]
swissprot
ID Q9M001
description Phosphatidate cytidylyltransferase 5, chloroplastic OS=Arabidopsis thaliana GN=CDS5 PE=1 SV=1
trembl
ID A0A067K950
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14566 PE=4 SV=1
Gene Ontology
ID GO:0016021
description cytidinediphosphate diacylglycerol synthase 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34519: 188570-191034
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000329_310 0.0 - - PREDICTED: phosphatidate cytidylyltransferase 4, chloroplastic [Jatropha curcas]
2 Hb_001829_060 0.0523051064 - - Eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
3 Hb_000205_270 0.0650837856 - - PREDICTED: uncharacterized protein LOC105632722 isoform X1 [Jatropha curcas]
4 Hb_001109_020 0.0652551559 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003455_040 0.0666187443 - - hypothetical protein JCGZ_17270 [Jatropha curcas]
6 Hb_003927_130 0.0688390118 - - PREDICTED: nudix hydrolase 9 [Phoenix dactylifera]
7 Hb_000170_010 0.0692690873 - - o-methyltransferase, putative [Ricinus communis]
8 Hb_016065_010 0.0695075379 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08305 [Jatropha curcas]
9 Hb_000444_050 0.07044601 transcription factor TF Family: HMG PREDICTED: uncharacterized protein LOC105648212 isoform X2 [Jatropha curcas]
10 Hb_012753_160 0.0724926572 - - ara4-interacting protein, putative [Ricinus communis]
11 Hb_002471_080 0.0726917961 - - oxidoreductase, putative [Ricinus communis]
12 Hb_009666_040 0.0729425995 - - glutathione transferase, putative [Ricinus communis]
13 Hb_000239_010 0.0759914509 - - WD-repeat protein, putative [Ricinus communis]
14 Hb_000751_130 0.0774730813 - - PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Jatropha curcas]
15 Hb_005488_010 0.0776244194 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001383_060 0.07924581 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
17 Hb_000086_070 0.0793272451 - - Peptidase S24/S26A/S26B/S26C family protein isoform 1 [Theobroma cacao]
18 Hb_001998_050 0.0797066095 - - PREDICTED: alpha N-terminal protein methyltransferase 1 [Jatropha curcas]
19 Hb_004837_140 0.0798484209 - - hypothetical protein PRUPE_ppa012469mg [Prunus persica]
20 Hb_002963_010 0.0809291521 - - PREDICTED: autophagy-related protein 18b-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000329_310 Hb_000329_310 Hb_001829_060 Hb_001829_060 Hb_000329_310--Hb_001829_060 Hb_000205_270 Hb_000205_270 Hb_000329_310--Hb_000205_270 Hb_001109_020 Hb_001109_020 Hb_000329_310--Hb_001109_020 Hb_003455_040 Hb_003455_040 Hb_000329_310--Hb_003455_040 Hb_003927_130 Hb_003927_130 Hb_000329_310--Hb_003927_130 Hb_000170_010 Hb_000170_010 Hb_000329_310--Hb_000170_010 Hb_001829_060--Hb_001109_020 Hb_000046_110 Hb_000046_110 Hb_001829_060--Hb_000046_110 Hb_001829_060--Hb_003927_130 Hb_009666_040 Hb_009666_040 Hb_001829_060--Hb_009666_040 Hb_000751_130 Hb_000751_130 Hb_001829_060--Hb_000751_130 Hb_016065_010 Hb_016065_010 Hb_000205_270--Hb_016065_010 Hb_000009_160 Hb_000009_160 Hb_000205_270--Hb_000009_160 Hb_000205_270--Hb_001109_020 Hb_005488_010 Hb_005488_010 Hb_000205_270--Hb_005488_010 Hb_000444_050 Hb_000444_050 Hb_000205_270--Hb_000444_050 Hb_001109_020--Hb_000046_110 Hb_001109_020--Hb_003927_130 Hb_000883_050 Hb_000883_050 Hb_001109_020--Hb_000883_050 Hb_000086_070 Hb_000086_070 Hb_001109_020--Hb_000086_070 Hb_003376_030 Hb_003376_030 Hb_003455_040--Hb_003376_030 Hb_003994_040 Hb_003994_040 Hb_003455_040--Hb_003994_040 Hb_000173_220 Hb_000173_220 Hb_003455_040--Hb_000173_220 Hb_012753_160 Hb_012753_160 Hb_003455_040--Hb_012753_160 Hb_002027_210 Hb_002027_210 Hb_003455_040--Hb_002027_210 Hb_002097_060 Hb_002097_060 Hb_003455_040--Hb_002097_060 Hb_001383_060 Hb_001383_060 Hb_003927_130--Hb_001383_060 Hb_003927_130--Hb_000086_070 Hb_001433_050 Hb_001433_050 Hb_003927_130--Hb_001433_050 Hb_003927_130--Hb_000883_050 Hb_004837_140 Hb_004837_140 Hb_000170_010--Hb_004837_140 Hb_002963_010 Hb_002963_010 Hb_000170_010--Hb_002963_010 Hb_005432_030 Hb_005432_030 Hb_000170_010--Hb_005432_030 Hb_000625_070 Hb_000625_070 Hb_000170_010--Hb_000625_070 Hb_012338_010 Hb_012338_010 Hb_000170_010--Hb_012338_010 Hb_002918_200 Hb_002918_200 Hb_000170_010--Hb_002918_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.927 1.36302 1.27956 1.42473 2.91223 5.19672
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.97519 8.30214 6.36146 2.28396 1.83952

CAGE analysis