Hb_000329_320

Information

Type -
Description -
Location Contig329: 191161-195463
Sequence    

Annotation

kegg
ID rcu:RCOM_1610530
description calmodulin, putative
nr
ID XP_012083624.1
description PREDICTED: DNA ligase 1 [Jatropha curcas]
swissprot
ID P41209
description Centrin-1 OS=Mus musculus GN=Cetn1 PE=1 SV=1
trembl
ID A0A067JXW4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14567 PE=4 SV=1
Gene Ontology
ID GO:0005509
description caltractin icl1b isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34520: 191173-195457 , PASA_asmbl_34521: 191393-194174
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000329_320 0.0 - - PREDICTED: DNA ligase 1 [Jatropha curcas]
2 Hb_032264_070 0.0600694779 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Jatropha curcas]
3 Hb_005269_070 0.0608450184 - - PREDICTED: translation factor GUF1 homolog, organellar chromatophore [Jatropha curcas]
4 Hb_002490_020 0.0627840563 - - peptidyl-tRNA hydrolase family protein [Populus trichocarpa]
5 Hb_000917_060 0.0644863154 - - PREDICTED: GTP-binding protein At2g22870 [Jatropha curcas]
6 Hb_000883_020 0.0671032204 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
7 Hb_000866_260 0.0688774127 - - PREDICTED: F-box/kelch-repeat protein SKIP4 isoform X1 [Jatropha curcas]
8 Hb_009421_020 0.0712787087 - - PREDICTED: caltractin-like [Jatropha curcas]
9 Hb_000777_040 0.071464948 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
10 Hb_017358_030 0.0715448685 transcription factor TF Family: FAR1 conserved hypothetical protein [Ricinus communis]
11 Hb_008165_060 0.0715707175 - - PREDICTED: uncharacterized protein LOC105635541 [Jatropha curcas]
12 Hb_000331_260 0.0746254927 - - PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
13 Hb_000815_070 0.0751318663 - - PREDICTED: methyltransferase-like protein 7A [Jatropha curcas]
14 Hb_156279_020 0.0753629957 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
15 Hb_002600_090 0.0755099321 - - ATP binding protein, putative [Ricinus communis]
16 Hb_000985_030 0.0764517002 - - PREDICTED: RRP15-like protein [Populus euphratica]
17 Hb_002235_250 0.0765077838 - - PREDICTED: cystathionine gamma-synthase 1, chloroplastic [Jatropha curcas]
18 Hb_003939_050 0.0782649512 - - protein with unknown function [Ricinus communis]
19 Hb_001012_010 0.079664804 - - PREDICTED: XIAP-associated factor 1 [Jatropha curcas]
20 Hb_000205_190 0.0799895378 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000329_320 Hb_000329_320 Hb_032264_070 Hb_032264_070 Hb_000329_320--Hb_032264_070 Hb_005269_070 Hb_005269_070 Hb_000329_320--Hb_005269_070 Hb_002490_020 Hb_002490_020 Hb_000329_320--Hb_002490_020 Hb_000917_060 Hb_000917_060 Hb_000329_320--Hb_000917_060 Hb_000883_020 Hb_000883_020 Hb_000329_320--Hb_000883_020 Hb_000866_260 Hb_000866_260 Hb_000329_320--Hb_000866_260 Hb_000656_240 Hb_000656_240 Hb_032264_070--Hb_000656_240 Hb_001268_420 Hb_001268_420 Hb_032264_070--Hb_001268_420 Hb_000985_030 Hb_000985_030 Hb_032264_070--Hb_000985_030 Hb_000614_160 Hb_000614_160 Hb_032264_070--Hb_000614_160 Hb_000046_050 Hb_000046_050 Hb_032264_070--Hb_000046_050 Hb_156279_020 Hb_156279_020 Hb_005269_070--Hb_156279_020 Hb_000331_260 Hb_000331_260 Hb_005269_070--Hb_000331_260 Hb_002169_040 Hb_002169_040 Hb_005269_070--Hb_002169_040 Hb_005269_070--Hb_000985_030 Hb_006634_070 Hb_006634_070 Hb_005269_070--Hb_006634_070 Hb_004195_270 Hb_004195_270 Hb_002490_020--Hb_004195_270 Hb_003747_200 Hb_003747_200 Hb_002490_020--Hb_003747_200 Hb_010222_020 Hb_010222_020 Hb_002490_020--Hb_010222_020 Hb_002141_030 Hb_002141_030 Hb_002490_020--Hb_002141_030 Hb_002600_090 Hb_002600_090 Hb_002490_020--Hb_002600_090 Hb_000917_060--Hb_000866_260 Hb_017358_030 Hb_017358_030 Hb_000917_060--Hb_017358_030 Hb_032202_140 Hb_032202_140 Hb_000917_060--Hb_032202_140 Hb_001163_050 Hb_001163_050 Hb_000917_060--Hb_001163_050 Hb_002013_020 Hb_002013_020 Hb_000917_060--Hb_002013_020 Hb_009545_080 Hb_009545_080 Hb_000883_020--Hb_009545_080 Hb_002997_080 Hb_002997_080 Hb_000883_020--Hb_002997_080 Hb_011995_010 Hb_011995_010 Hb_000883_020--Hb_011995_010 Hb_000230_560 Hb_000230_560 Hb_000883_020--Hb_000230_560 Hb_032986_010 Hb_032986_010 Hb_000883_020--Hb_032986_010 Hb_001357_350 Hb_001357_350 Hb_000883_020--Hb_001357_350 Hb_007389_010 Hb_007389_010 Hb_000866_260--Hb_007389_010 Hb_000866_260--Hb_017358_030 Hb_000866_260--Hb_002013_020 Hb_000753_240 Hb_000753_240 Hb_000866_260--Hb_000753_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.2412 8.61894 16.5448 8.66944 14.0482 16.5919
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.5146 19.8179 20.1908 12.697 14.7345

CAGE analysis