Hb_000329_330

Information

Type -
Description -
Location Contig329: 195915-199276
Sequence    

Annotation

kegg
ID tcc:TCM_005577
description Plant VAP
nr
ID XP_012083626.1
description PREDICTED: vesicle-associated protein 1-2-like [Jatropha curcas]
swissprot
ID Q9SHC8
description Vesicle-associated protein 1-2 OS=Arabidopsis thaliana GN=PVA12 PE=1 SV=1
trembl
ID A0A067JY48
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14568 PE=4 SV=1
Gene Ontology
ID GO:0005789
description vesicle-associated protein 1-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34524: 195931-199199
cDNA
(Sanger)
(ID:Location)		 005_J08.ab1: 196213-199199 , 030_J02.ab1: 196280-199199

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000329_330 0.0 - - PREDICTED: vesicle-associated protein 1-2-like [Jatropha curcas]
2 Hb_006573_220 0.0578877215 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]
3 Hb_003376_130 0.0608688294 transcription factor TF Family: S1Fa-like DNA-binding protein S1FA, putative [Ricinus communis]
4 Hb_000069_100 0.0650637022 - - conserved hypothetical protein [Ricinus communis]
5 Hb_148200_010 0.0688519223 - - hypothetical protein 33 [Hevea brasiliensis]
6 Hb_003376_030 0.0743379929 - - PREDICTED: ribonuclease P protein subunit p29 isoform X2 [Jatropha curcas]
7 Hb_002097_060 0.0752231628 - - PREDICTED: 50S ribosomal protein L9, chloroplastic-like isoform X1 [Jatropha curcas]
8 Hb_148930_010 0.0761710531 - - PREDICTED: uncharacterized protein LOC105648400 [Jatropha curcas]
9 Hb_001912_010 0.0790040361 - - PREDICTED: uncharacterized protein LOC105636600 [Jatropha curcas]
10 Hb_001191_090 0.0828168916 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
11 Hb_000212_260 0.0835821542 - - acyl-carrier-protein [Triadica sebifera]
12 Hb_007479_020 0.0846955714 - - PREDICTED: CMP-sialic acid transporter 5 [Jatropha curcas]
13 Hb_000012_100 0.084730344 - - UPF0587 protein C1orf123 homolog [Jatropha curcas]
14 Hb_007382_150 0.0867905794 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]
15 Hb_003938_180 0.0870149401 - - lesion inducing family protein [Populus trichocarpa]
16 Hb_003053_030 0.0888011613 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
17 Hb_001687_040 0.0890802931 - - actin-depolymerizing factor [Hevea brasiliensis]
18 Hb_001433_050 0.0904355222 - - 60S ribosomal protein L18, putative [Ricinus communis]
19 Hb_002107_120 0.0915752167 - - PREDICTED: transcription elongation factor 1 homolog [Jatropha curcas]
20 Hb_089140_100 0.0925204798 - - PREDICTED: F-box/LRR-repeat protein 4 [Jatropha curcas]

Gene co-expression network

sample Hb_000329_330 Hb_000329_330 Hb_006573_220 Hb_006573_220 Hb_000329_330--Hb_006573_220 Hb_003376_130 Hb_003376_130 Hb_000329_330--Hb_003376_130 Hb_000069_100 Hb_000069_100 Hb_000329_330--Hb_000069_100 Hb_148200_010 Hb_148200_010 Hb_000329_330--Hb_148200_010 Hb_003376_030 Hb_003376_030 Hb_000329_330--Hb_003376_030 Hb_002097_060 Hb_002097_060 Hb_000329_330--Hb_002097_060 Hb_001191_090 Hb_001191_090 Hb_006573_220--Hb_001191_090 Hb_001687_040 Hb_001687_040 Hb_006573_220--Hb_001687_040 Hb_006573_220--Hb_002097_060 Hb_006573_220--Hb_003376_030 Hb_007382_150 Hb_007382_150 Hb_006573_220--Hb_007382_150 Hb_000212_260 Hb_000212_260 Hb_003376_130--Hb_000212_260 Hb_148930_010 Hb_148930_010 Hb_003376_130--Hb_148930_010 Hb_003086_100 Hb_003086_100 Hb_003376_130--Hb_003086_100 Hb_003376_130--Hb_148200_010 Hb_002571_020 Hb_002571_020 Hb_003376_130--Hb_002571_020 Hb_000069_100--Hb_002097_060 Hb_006831_030 Hb_006831_030 Hb_000069_100--Hb_006831_030 Hb_001616_060 Hb_001616_060 Hb_000069_100--Hb_001616_060 Hb_000069_100--Hb_000212_260 Hb_000069_100--Hb_006573_220 Hb_148200_010--Hb_001191_090 Hb_148200_010--Hb_003376_030 Hb_003053_030 Hb_003053_030 Hb_148200_010--Hb_003053_030 Hb_001433_050 Hb_001433_050 Hb_148200_010--Hb_001433_050 Hb_004156_040 Hb_004156_040 Hb_148200_010--Hb_004156_040 Hb_001279_360 Hb_001279_360 Hb_148200_010--Hb_001279_360 Hb_003455_040 Hb_003455_040 Hb_003376_030--Hb_003455_040 Hb_003376_030--Hb_002097_060 Hb_000146_020 Hb_000146_020 Hb_003376_030--Hb_000146_020 Hb_001160_030 Hb_001160_030 Hb_003376_030--Hb_001160_030 Hb_002027_210 Hb_002027_210 Hb_003376_030--Hb_002027_210 Hb_002097_060--Hb_003455_040 Hb_001575_020 Hb_001575_020 Hb_002097_060--Hb_001575_020 Hb_002097_060--Hb_148200_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.0837 3.7225 6.63346 8.06894 10.6194 14.1639
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.4396 41.9379 31.4421 11.0077 3.24104

CAGE analysis