Hb_000329_340

Information

Type -
Description -
Location Contig329: 200527-205985
Sequence    

Annotation

kegg
ID rcu:RCOM_1610510
description hypothetical protein
nr
ID XP_002511656.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q5PP62
description SPX domain-containing protein 3 OS=Arabidopsis thaliana GN=SPX3 PE=2 SV=1
trembl
ID B9RD67
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1610510 PE=4 SV=1
Gene Ontology
ID GO:0009706
description spx domain gene 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34526: 200377-201050
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000329_340 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001123_060 0.0800588089 - - PREDICTED: ALBINO3-like protein 2, chloroplastic [Jatropha curcas]
3 Hb_000614_250 0.0810856551 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
4 Hb_005188_080 0.08918154 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
5 Hb_000856_010 0.0902060356 - - PREDICTED: uncharacterized protein LOC105640466 [Jatropha curcas]
6 Hb_003777_320 0.0920775153 - - PREDICTED: U3 small nucleolar RNA-associated protein 15 homolog [Jatropha curcas]
7 Hb_010423_030 0.0958310557 - - PREDICTED: uncharacterized protein LOC105645584 [Jatropha curcas]
8 Hb_002983_050 0.0980093191 - - PREDICTED: acetylornithine aminotransferase, mitochondrial [Jatropha curcas]
9 Hb_001222_080 0.0994391446 - - PREDICTED: uncharacterized protein LOC105642435 isoform X1 [Jatropha curcas]
10 Hb_089032_030 0.1022275623 - - PREDICTED: 3-isopropylmalate dehydrogenase 2, chloroplastic-like [Jatropha curcas]
11 Hb_000710_060 0.1028577864 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105645554 isoform X2 [Jatropha curcas]
12 Hb_094836_010 0.1049387083 - - PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
13 Hb_000645_090 0.1051000342 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001545_170 0.1062190057 - - PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
15 Hb_003847_030 0.1076885952 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Jatropha curcas]
16 Hb_010775_040 0.1078781505 - - PREDICTED: mediator of RNA polymerase II transcription subunit 4 [Jatropha curcas]
17 Hb_000917_230 0.1089593347 - - PREDICTED: coiled-coil domain-containing protein 130-like [Jatropha curcas]
18 Hb_008770_030 0.1097978796 - - PREDICTED: MACPF domain-containing protein At4g24290-like [Jatropha curcas]
19 Hb_002620_020 0.1104103536 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
20 Hb_004324_090 0.1112418596 - - PREDICTED: uncharacterized protein LOC105648352 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000329_340 Hb_000329_340 Hb_001123_060 Hb_001123_060 Hb_000329_340--Hb_001123_060 Hb_000614_250 Hb_000614_250 Hb_000329_340--Hb_000614_250 Hb_005188_080 Hb_005188_080 Hb_000329_340--Hb_005188_080 Hb_000856_010 Hb_000856_010 Hb_000329_340--Hb_000856_010 Hb_003777_320 Hb_003777_320 Hb_000329_340--Hb_003777_320 Hb_010423_030 Hb_010423_030 Hb_000329_340--Hb_010423_030 Hb_001123_060--Hb_010423_030 Hb_001278_100 Hb_001278_100 Hb_001123_060--Hb_001278_100 Hb_000032_380 Hb_000032_380 Hb_001123_060--Hb_000032_380 Hb_003389_040 Hb_003389_040 Hb_001123_060--Hb_003389_040 Hb_001030_020 Hb_001030_020 Hb_001123_060--Hb_001030_020 Hb_000840_250 Hb_000840_250 Hb_000614_250--Hb_000840_250 Hb_001633_210 Hb_001633_210 Hb_000614_250--Hb_001633_210 Hb_001014_030 Hb_001014_030 Hb_000614_250--Hb_001014_030 Hb_002450_020 Hb_002450_020 Hb_000614_250--Hb_002450_020 Hb_000710_060 Hb_000710_060 Hb_000614_250--Hb_000710_060 Hb_003847_030 Hb_003847_030 Hb_000614_250--Hb_003847_030 Hb_000015_040 Hb_000015_040 Hb_005188_080--Hb_000015_040 Hb_000680_160 Hb_000680_160 Hb_005188_080--Hb_000680_160 Hb_002078_350 Hb_002078_350 Hb_005188_080--Hb_002078_350 Hb_001545_170 Hb_001545_170 Hb_005188_080--Hb_001545_170 Hb_001579_220 Hb_001579_220 Hb_005188_080--Hb_001579_220 Hb_000645_090 Hb_000645_090 Hb_005188_080--Hb_000645_090 Hb_012022_040 Hb_012022_040 Hb_000856_010--Hb_012022_040 Hb_000928_070 Hb_000928_070 Hb_000856_010--Hb_000928_070 Hb_005054_110 Hb_005054_110 Hb_000856_010--Hb_005054_110 Hb_004078_040 Hb_004078_040 Hb_000856_010--Hb_004078_040 Hb_000221_190 Hb_000221_190 Hb_000856_010--Hb_000221_190 Hb_000359_060 Hb_000359_060 Hb_000856_010--Hb_000359_060 Hb_003777_320--Hb_005188_080 Hb_001168_020 Hb_001168_020 Hb_003777_320--Hb_001168_020 Hb_003777_320--Hb_003847_030 Hb_007881_030 Hb_007881_030 Hb_003777_320--Hb_007881_030 Hb_000696_330 Hb_000696_330 Hb_003777_320--Hb_000696_330 Hb_000504_070 Hb_000504_070 Hb_003777_320--Hb_000504_070 Hb_001470_030 Hb_001470_030 Hb_010423_030--Hb_001470_030 Hb_010423_030--Hb_001030_020 Hb_010423_030--Hb_001278_100 Hb_089032_030 Hb_089032_030 Hb_010423_030--Hb_089032_030 Hb_010423_030--Hb_012022_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.64508 3.70088 1.10508 4.33062 2.0359 2.89178
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.45276 6.12894 3.8071 3.37493 3.20382

CAGE analysis