Hb_000329_370

Information

Type -
Description -
Location Contig329: 217125-226571
Sequence    

Annotation

kegg
ID tcc:TCM_005597
description Nucleotidyltransferase family protein isoform 1
nr
ID KDP28800.1
description hypothetical protein JCGZ_14571 [Jatropha curcas]
swissprot
ID Q5XG87
description Non-canonical poly(A) RNA polymerase PAPD7 OS=Homo sapiens GN=PAPD7 PE=1 SV=3
trembl
ID A0A067K955
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14571 PE=4 SV=1
Gene Ontology
ID GO:0016779
description nucleotidyltransferase family protein isoform 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34529: 217553-217997 , PASA_asmbl_34530: 218627-221132 , PASA_asmbl_34531: 218627-221575 , PASA_asmbl_34532: 218559-219469 , PASA_asmbl_34533: 222065-223041 , PASA_asmbl_34534: 223113-223236 , PASA_asmbl_34537: 224784-225882
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000329_370 0.0 - - hypothetical protein JCGZ_14571 [Jatropha curcas]
2 Hb_012194_030 0.0472630199 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
3 Hb_005489_020 0.054594639 - - conserved hypothetical protein [Ricinus communis]
4 Hb_010712_050 0.0599602026 - - PREDICTED: protein ELC-like [Jatropha curcas]
5 Hb_011537_050 0.0628960054 - - PREDICTED: protein EMSY-LIKE 3 isoform X1 [Jatropha curcas]
6 Hb_002085_030 0.0631903351 - - PREDICTED: protein CHROMATIN REMODELING 4 isoform X2 [Jatropha curcas]
7 Hb_000441_120 0.0648914095 - - PREDICTED: DNA-damage-repair/toleration protein DRT111, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_000866_460 0.0652752007 - - PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic-like [Jatropha curcas]
9 Hb_002218_090 0.0658255826 - - Poly(rC)-binding protein, putative [Ricinus communis]
10 Hb_001430_080 0.0659528065 - - PREDICTED: putative mediator of RNA polymerase II transcription subunit 26 [Jatropha curcas]
11 Hb_005867_070 0.066267186 - - DNA binding protein, putative [Ricinus communis]
12 Hb_001191_120 0.0664079901 - - PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
13 Hb_004236_050 0.0666861342 - - PREDICTED: nipped-B-like protein A [Jatropha curcas]
14 Hb_000243_210 0.0667626261 - - protein with unknown function [Ricinus communis]
15 Hb_002732_040 0.067516604 - - PREDICTED: uncharacterized protein LOC105628163 isoform X1 [Jatropha curcas]
16 Hb_003030_060 0.0676073212 - - PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 2-like [Jatropha curcas]
17 Hb_000395_130 0.0690878827 - - PREDICTED: N6-adenosine-methyltransferase MT-A70-like [Jatropha curcas]
18 Hb_002205_250 0.0691910441 - - PREDICTED: probable inactive serine/threonine-protein kinase scy1 isoform X1 [Jatropha curcas]
19 Hb_004837_180 0.0692976165 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
20 Hb_021443_040 0.0695601753 - - acc synthase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000329_370 Hb_000329_370 Hb_012194_030 Hb_012194_030 Hb_000329_370--Hb_012194_030 Hb_005489_020 Hb_005489_020 Hb_000329_370--Hb_005489_020 Hb_010712_050 Hb_010712_050 Hb_000329_370--Hb_010712_050 Hb_011537_050 Hb_011537_050 Hb_000329_370--Hb_011537_050 Hb_002085_030 Hb_002085_030 Hb_000329_370--Hb_002085_030 Hb_000441_120 Hb_000441_120 Hb_000329_370--Hb_000441_120 Hb_162275_050 Hb_162275_050 Hb_012194_030--Hb_162275_050 Hb_012194_030--Hb_002085_030 Hb_003835_070 Hb_003835_070 Hb_012194_030--Hb_003835_070 Hb_012194_030--Hb_010712_050 Hb_012779_090 Hb_012779_090 Hb_012194_030--Hb_012779_090 Hb_005779_080 Hb_005779_080 Hb_005489_020--Hb_005779_080 Hb_001227_030 Hb_001227_030 Hb_005489_020--Hb_001227_030 Hb_021443_040 Hb_021443_040 Hb_005489_020--Hb_021443_040 Hb_002890_290 Hb_002890_290 Hb_005489_020--Hb_002890_290 Hb_003929_280 Hb_003929_280 Hb_005489_020--Hb_003929_280 Hb_003030_060 Hb_003030_060 Hb_010712_050--Hb_003030_060 Hb_002234_090 Hb_002234_090 Hb_010712_050--Hb_002234_090 Hb_001614_060 Hb_001614_060 Hb_010712_050--Hb_001614_060 Hb_010712_050--Hb_003835_070 Hb_001225_040 Hb_001225_040 Hb_011537_050--Hb_001225_040 Hb_001080_230 Hb_001080_230 Hb_011537_050--Hb_001080_230 Hb_011537_050--Hb_003030_060 Hb_000025_410 Hb_000025_410 Hb_011537_050--Hb_000025_410 Hb_000003_190 Hb_000003_190 Hb_011537_050--Hb_000003_190 Hb_012305_030 Hb_012305_030 Hb_002085_030--Hb_012305_030 Hb_003866_080 Hb_003866_080 Hb_002085_030--Hb_003866_080 Hb_001767_140 Hb_001767_140 Hb_002085_030--Hb_001767_140 Hb_001279_120 Hb_001279_120 Hb_002085_030--Hb_001279_120 Hb_006420_040 Hb_006420_040 Hb_000441_120--Hb_006420_040 Hb_000165_040 Hb_000165_040 Hb_000441_120--Hb_000165_040 Hb_003206_130 Hb_003206_130 Hb_000441_120--Hb_003206_130 Hb_000207_180 Hb_000207_180 Hb_000441_120--Hb_000207_180 Hb_000395_130 Hb_000395_130 Hb_000441_120--Hb_000395_130 Hb_009270_020 Hb_009270_020 Hb_000441_120--Hb_009270_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.30188 7.05057 4.99647 3.28771 5.15399 4.92997
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.35933 3.66109 3.80673 4.86582 5.7727

CAGE analysis