Hb_000329_410

Information

Type -
Description -
Location Contig329: 257193-258918
Sequence    

Annotation

kegg
ID rcu:RCOM_1610130
description Beta-expansin 3 precursor, putative
nr
ID XP_002511649.1
description Beta-expansin 3 precursor, putative [Ricinus communis]
swissprot
ID Q9SHY6
description Putative expansin-B2 OS=Arabidopsis thaliana GN=EXPB2 PE=3 SV=2
trembl
ID B9RD60
description Beta-expansin 3, putative OS=Ricinus communis GN=RCOM_1610130 PE=3 SV=1
Gene Ontology
ID GO:0005576
description expansin-b2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34540: 257279-258631
cDNA
(Sanger)
(ID:Location)		 042_K24.ab1: 257280-257656

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000329_410 0.0 - - Beta-expansin 3 precursor, putative [Ricinus communis]
2 Hb_000905_140 0.0353100044 - - PREDICTED: protein gamma response 1 isoform X2 [Jatropha curcas]
3 Hb_011495_020 0.0415179589 - - Pectinesterase-2 precursor, putative [Ricinus communis]
4 Hb_001114_300 0.044569389 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
5 Hb_000057_030 0.0457049937 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_002200_010 0.0459306851 - - PREDICTED: sperm acrosomal protein FSA-ACR.1-like [Jatropha curcas]
7 Hb_180483_010 0.0462718849 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_005780_010 0.0465564736 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
9 Hb_169426_010 0.0467009805 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_000286_250 0.0467584599 desease resistance Gene Name: NB-ARC -
11 Hb_170761_010 0.0470537322 - - PREDICTED: uncharacterized protein LOC105787794 [Gossypium raimondii]
12 Hb_002081_250 0.0471044749 - - hypothetical protein POPTR_0009s08940g [Populus trichocarpa]
13 Hb_110822_020 0.0473906357 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
14 Hb_002997_010 0.0502965033 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Malus domestica]
15 Hb_021931_030 0.0549503482 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
16 Hb_006478_190 0.0560344362 - - lipid binding protein, putative [Ricinus communis]
17 Hb_161981_020 0.0585554339 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_008367_020 0.0587333506 - - PREDICTED: proline-rich receptor-like protein kinase PERK1 [Gossypium raimondii]
19 Hb_002281_070 0.0608171332 - - hypothetical protein JCGZ_04352 [Jatropha curcas]
20 Hb_173102_010 0.0622656683 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000329_410 Hb_000329_410 Hb_000905_140 Hb_000905_140 Hb_000329_410--Hb_000905_140 Hb_011495_020 Hb_011495_020 Hb_000329_410--Hb_011495_020 Hb_001114_300 Hb_001114_300 Hb_000329_410--Hb_001114_300 Hb_000057_030 Hb_000057_030 Hb_000329_410--Hb_000057_030 Hb_002200_010 Hb_002200_010 Hb_000329_410--Hb_002200_010 Hb_180483_010 Hb_180483_010 Hb_000329_410--Hb_180483_010 Hb_000905_140--Hb_001114_300 Hb_000905_140--Hb_180483_010 Hb_005780_010 Hb_005780_010 Hb_000905_140--Hb_005780_010 Hb_169426_010 Hb_169426_010 Hb_000905_140--Hb_169426_010 Hb_000905_140--Hb_011495_020 Hb_011495_020--Hb_000057_030 Hb_011495_020--Hb_002200_010 Hb_000286_250 Hb_000286_250 Hb_011495_020--Hb_000286_250 Hb_170761_010 Hb_170761_010 Hb_011495_020--Hb_170761_010 Hb_002081_250 Hb_002081_250 Hb_011495_020--Hb_002081_250 Hb_110822_020 Hb_110822_020 Hb_011495_020--Hb_110822_020 Hb_000859_040 Hb_000859_040 Hb_001114_300--Hb_000859_040 Hb_001141_170 Hb_001141_170 Hb_001114_300--Hb_001141_170 Hb_001114_300--Hb_169426_010 Hb_001114_300--Hb_005780_010 Hb_000057_030--Hb_002200_010 Hb_000057_030--Hb_000286_250 Hb_000057_030--Hb_170761_010 Hb_000057_030--Hb_002081_250 Hb_000057_030--Hb_110822_020 Hb_002200_010--Hb_000286_250 Hb_002200_010--Hb_170761_010 Hb_002200_010--Hb_002081_250 Hb_002200_010--Hb_110822_020 Hb_180483_010--Hb_005780_010 Hb_180483_010--Hb_169426_010 Hb_002997_010 Hb_002997_010 Hb_180483_010--Hb_002997_010 Hb_173102_010 Hb_173102_010 Hb_180483_010--Hb_173102_010 Hb_180483_010--Hb_011495_020 Hb_008367_020 Hb_008367_020 Hb_180483_010--Hb_008367_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 35.8582 0.18096 0.264218 0 0.0187671
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0707757 150.484 0.0786767

CAGE analysis