Hb_000329_430

Information

Type transcription factor
Description TF Family: bHLH
Location Contig329: 269555-274324
Sequence    

Annotation

kegg
ID rcu:RCOM_1609910
description DNA binding protein, putative
nr
ID XP_012083633.1
description PREDICTED: transcription factor UNE10 [Jatropha curcas]
swissprot
ID Q8GZ38
description Transcription factor UNE10 OS=Arabidopsis thaliana GN=UNE10 PE=2 SV=1
trembl
ID A0A067K958
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14576 PE=4 SV=1
Gene Ontology
ID GO:0009506
description transcription factor une10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34542: 269500-274292
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000329_430 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE10 [Jatropha curcas]
2 Hb_000307_100 0.0466831301 - - Plastocyanin A, chloroplast precursor, putative [Ricinus communis]
3 Hb_000098_040 0.0496431086 - - Ferredoxin-2, chloroplast precursor, putative [Ricinus communis]
4 Hb_009771_090 0.054424666 - - -
5 Hb_003925_120 0.0569009485 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_26658 [Jatropha curcas]
6 Hb_000826_010 0.0638381668 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000352_230 0.0664116146 - - PREDICTED: glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic isoform X2 [Jatropha curcas]
8 Hb_009193_070 0.0696907 - - fatty acid elongase 3-ketoacyl-CoA synthase 1 [Arabidopsis thaliana]
9 Hb_002809_030 0.072903062 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001564_120 0.0796596761 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP26-2, chloroplastic [Populus euphratica]
11 Hb_001307_050 0.0825808905 - - PREDICTED: protein NRT1/ PTR FAMILY 5.2-like [Jatropha curcas]
12 Hb_001007_070 0.085316768 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
13 Hb_005054_120 0.0860628679 - - PREDICTED: sedoheptulose-1,7-bisphosphatase, chloroplastic [Jatropha curcas]
14 Hb_002421_150 0.0861042199 - - hypothetical protein PRUPE_ppa020511mg [Prunus persica]
15 Hb_006291_050 0.0905623783 - - PREDICTED: polyribonucleotide nucleotidyltransferase 2, mitochondrial isoform X1 [Jatropha curcas]
16 Hb_000099_120 0.0909444721 - - PREDICTED: GDT1-like protein 1, chloroplastic isoform X3 [Jatropha curcas]
17 Hb_000545_180 0.0913367311 - - Photosystem II stability/assembly factor HCF136, chloroplast precursor, putative [Ricinus communis]
18 Hb_000928_260 0.092405576 - - hypothetical protein POPTR_0019s06080g [Populus trichocarpa]
19 Hb_014361_120 0.0925734375 - - PREDICTED: BTB/POZ domain-containing protein At5g67385 [Jatropha curcas]
20 Hb_001999_230 0.0925807841 - - PREDICTED: uncharacterized protein LOC105630678 [Jatropha curcas]

Gene co-expression network

sample Hb_000329_430 Hb_000329_430 Hb_000307_100 Hb_000307_100 Hb_000329_430--Hb_000307_100 Hb_000098_040 Hb_000098_040 Hb_000329_430--Hb_000098_040 Hb_009771_090 Hb_009771_090 Hb_000329_430--Hb_009771_090 Hb_003925_120 Hb_003925_120 Hb_000329_430--Hb_003925_120 Hb_000826_010 Hb_000826_010 Hb_000329_430--Hb_000826_010 Hb_000352_230 Hb_000352_230 Hb_000329_430--Hb_000352_230 Hb_000307_100--Hb_000098_040 Hb_002809_030 Hb_002809_030 Hb_000307_100--Hb_002809_030 Hb_000307_100--Hb_000352_230 Hb_000307_100--Hb_009771_090 Hb_010697_020 Hb_010697_020 Hb_000307_100--Hb_010697_020 Hb_000098_040--Hb_000352_230 Hb_001564_120 Hb_001564_120 Hb_000098_040--Hb_001564_120 Hb_000098_040--Hb_009771_090 Hb_000098_040--Hb_002809_030 Hb_009771_090--Hb_000352_230 Hb_000545_180 Hb_000545_180 Hb_009771_090--Hb_000545_180 Hb_014361_120 Hb_014361_120 Hb_009771_090--Hb_014361_120 Hb_009193_070 Hb_009193_070 Hb_003925_120--Hb_009193_070 Hb_008847_050 Hb_008847_050 Hb_003925_120--Hb_008847_050 Hb_001141_100 Hb_001141_100 Hb_003925_120--Hb_001141_100 Hb_028491_010 Hb_028491_010 Hb_003925_120--Hb_028491_010 Hb_006615_090 Hb_006615_090 Hb_003925_120--Hb_006615_090 Hb_002421_150 Hb_002421_150 Hb_000826_010--Hb_002421_150 Hb_002701_250 Hb_002701_250 Hb_000826_010--Hb_002701_250 Hb_000826_010--Hb_009771_090 Hb_000826_010--Hb_000098_040 Hb_001269_030 Hb_001269_030 Hb_000826_010--Hb_001269_030 Hb_000352_230--Hb_000545_180 Hb_000352_230--Hb_002809_030 Hb_000352_230--Hb_014361_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.7463 23.1082 19.9461 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0230673 0.0544497 0 0.00722221 68.3511

CAGE analysis