Hb_000329_440

Information

Type -
Description -
Location Contig329: 278992-282166
Sequence    

Annotation

kegg
ID pop:POPTR_0002s14420g
description POPTRDRAFT_798966; hypothetical protein
nr
ID XP_012083634.1
description PREDICTED: F-box protein At5g51370-like [Jatropha curcas]
swissprot
ID Q9FGN3
description F-box protein At5g51380 OS=Arabidopsis thaliana GN=At5g51380 PE=2 SV=1
trembl
ID A0A067JXX0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14577 PE=4 SV=1
Gene Ontology
ID GO:0005784
description f-box protein at5g51370-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34543: 281577-282129
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000329_440 0.0 - - PREDICTED: F-box protein At5g51370-like [Jatropha curcas]
2 Hb_000520_040 0.0580573745 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
3 Hb_001098_040 0.0649102751 - - hypothetical protein JCGZ_00749 [Jatropha curcas]
4 Hb_000500_240 0.067211979 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004835_020 0.0704172327 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
6 Hb_102179_010 0.07180275 - - protein binding protein, putative [Ricinus communis]
7 Hb_005694_160 0.0733462856 - - conserved hypothetical protein [Ricinus communis]
8 Hb_060253_010 0.0769985533 - - hypothetical protein JCGZ_14707 [Jatropha curcas]
9 Hb_001047_210 0.0777037404 - - PSI reaction center subunit II [Citrus sinensis]
10 Hb_005569_010 0.0789899554 - - Heme-binding protein, putative [Ricinus communis]
11 Hb_000424_140 0.0853256251 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
12 Hb_002246_030 0.0872248487 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
13 Hb_002572_040 0.0902571923 - - PREDICTED: uncharacterized protein LOC105635149 [Jatropha curcas]
14 Hb_001210_060 0.091610553 - - PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
15 Hb_000958_090 0.0918513764 - - PREDICTED: cation/H(+) antiporter 28 [Jatropha curcas]
16 Hb_016093_030 0.0926895725 - - ankyrin repeat protein [Bruguiera gymnorhiza]
17 Hb_005842_010 0.0930030044 - - nitrate transporter, putative [Ricinus communis]
18 Hb_009421_070 0.0932219984 - - PREDICTED: cell number regulator 1-like [Jatropha curcas]
19 Hb_000046_120 0.0935620284 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase putative 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
20 Hb_003435_030 0.096491294 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000329_440 Hb_000329_440 Hb_000520_040 Hb_000520_040 Hb_000329_440--Hb_000520_040 Hb_001098_040 Hb_001098_040 Hb_000329_440--Hb_001098_040 Hb_000500_240 Hb_000500_240 Hb_000329_440--Hb_000500_240 Hb_004835_020 Hb_004835_020 Hb_000329_440--Hb_004835_020 Hb_102179_010 Hb_102179_010 Hb_000329_440--Hb_102179_010 Hb_005694_160 Hb_005694_160 Hb_000329_440--Hb_005694_160 Hb_000520_040--Hb_000500_240 Hb_001047_210 Hb_001047_210 Hb_000520_040--Hb_001047_210 Hb_008536_020 Hb_008536_020 Hb_000520_040--Hb_008536_020 Hb_005337_100 Hb_005337_100 Hb_000520_040--Hb_005337_100 Hb_060253_010 Hb_060253_010 Hb_000520_040--Hb_060253_010 Hb_002942_200 Hb_002942_200 Hb_001098_040--Hb_002942_200 Hb_009421_070 Hb_009421_070 Hb_001098_040--Hb_009421_070 Hb_001098_040--Hb_060253_010 Hb_000627_050 Hb_000627_050 Hb_001098_040--Hb_000627_050 Hb_000977_020 Hb_000977_020 Hb_001098_040--Hb_000977_020 Hb_000500_240--Hb_005694_160 Hb_000500_240--Hb_102179_010 Hb_000500_240--Hb_001047_210 Hb_000329_780 Hb_000329_780 Hb_000500_240--Hb_000329_780 Hb_004835_020--Hb_102179_010 Hb_005569_010 Hb_005569_010 Hb_004835_020--Hb_005569_010 Hb_000958_090 Hb_000958_090 Hb_004835_020--Hb_000958_090 Hb_004835_020--Hb_000520_040 Hb_004835_020--Hb_001047_210 Hb_002246_030 Hb_002246_030 Hb_102179_010--Hb_002246_030 Hb_002182_010 Hb_002182_010 Hb_102179_010--Hb_002182_010 Hb_102179_010--Hb_001047_210 Hb_102179_010--Hb_000520_040 Hb_005694_160--Hb_002246_030 Hb_005694_160--Hb_000520_040 Hb_005694_160--Hb_102179_010 Hb_015561_010 Hb_015561_010 Hb_005694_160--Hb_015561_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0120867 0.903294 3.2412 4.28499 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0330655 0.367442 5.82256

CAGE analysis