Hb_000329_490

Information

Type -
Description -
Location Contig329: 348404-355263
Sequence    

Annotation

kegg
ID rcu:RCOM_1276510
description chaperonin containing t-complex protein 1, alpha subunit, tcpa, putative
nr
ID KDP28811.1
description hypothetical protein JCGZ_14582 [Jatropha curcas]
swissprot
ID P28769
description T-complex protein 1 subunit alpha OS=Arabidopsis thaliana GN=CCT1 PE=1 SV=1
trembl
ID A0A067JXX4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14582 PE=3 SV=1
Gene Ontology
ID GO:0005829
description t-complex protein 1 subunit alpha

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34552: 348267-355246
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000329_490 0.0 - - hypothetical protein JCGZ_14582 [Jatropha curcas]
2 Hb_022250_110 0.0649807734 - - PREDICTED: staphylococcal nuclease domain-containing protein 1 [Jatropha curcas]
3 Hb_006114_020 0.0734306447 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000029_320 0.078783462 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
5 Hb_006882_010 0.0823587319 - - PREDICTED: dnaJ homolog subfamily B member 1 [Cucumis sativus]
6 Hb_000300_580 0.0834697696 - - PREDICTED: importin-5-like [Jatropha curcas]
7 Hb_002070_070 0.0855295147 - - ATP binding protein, putative [Ricinus communis]
8 Hb_081879_030 0.089821017 - - PREDICTED: U3 small nucleolar RNA-associated protein 21 homolog [Jatropha curcas]
9 Hb_002159_040 0.0923658245 - - hypothetical protein PRUPE_ppa001563mg [Prunus persica]
10 Hb_002903_080 0.0926085357 - - PREDICTED: splicing factor 3B subunit 2 [Jatropha curcas]
11 Hb_005129_050 0.0930213689 - - PREDICTED: probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase [Jatropha curcas]
12 Hb_004218_240 0.0953041894 - - PREDICTED: DNA-directed RNA polymerase V subunit 1 [Jatropha curcas]
13 Hb_000436_040 0.0953806769 - - PREDICTED: transportin-1 [Jatropha curcas]
14 Hb_001433_190 0.0960249178 - - PREDICTED: eukaryotic translation initiation factor 3 subunit A [Jatropha curcas]
15 Hb_007668_020 0.0966375352 - - PREDICTED: uncharacterized protein LOC105631102 [Jatropha curcas]
16 Hb_000209_070 0.0984418411 - - PREDICTED: chloride channel protein CLC-f isoform X1 [Jatropha curcas]
17 Hb_078477_040 0.0985811565 - - nuclear movement protein nudc, putative [Ricinus communis]
18 Hb_011497_010 0.0988558118 - - PREDICTED: E3 ubiquitin-protein ligase RNF126-like [Jatropha curcas]
19 Hb_000037_110 0.1000881937 - - PREDICTED: cation/H(+) antiporter 18-like [Populus euphratica]
20 Hb_002687_190 0.1009868386 - - prolyl oligopeptidase [Cicer arietinum]

Gene co-expression network

sample Hb_000329_490 Hb_000329_490 Hb_022250_110 Hb_022250_110 Hb_000329_490--Hb_022250_110 Hb_006114_020 Hb_006114_020 Hb_000329_490--Hb_006114_020 Hb_000029_320 Hb_000029_320 Hb_000329_490--Hb_000029_320 Hb_006882_010 Hb_006882_010 Hb_000329_490--Hb_006882_010 Hb_000300_580 Hb_000300_580 Hb_000329_490--Hb_000300_580 Hb_002070_070 Hb_002070_070 Hb_000329_490--Hb_002070_070 Hb_000209_070 Hb_000209_070 Hb_022250_110--Hb_000209_070 Hb_022250_110--Hb_000029_320 Hb_078477_040 Hb_078477_040 Hb_022250_110--Hb_078477_040 Hb_003018_160 Hb_003018_160 Hb_022250_110--Hb_003018_160 Hb_006002_030 Hb_006002_030 Hb_022250_110--Hb_006002_030 Hb_021409_170 Hb_021409_170 Hb_006114_020--Hb_021409_170 Hb_015763_030 Hb_015763_030 Hb_006114_020--Hb_015763_030 Hb_004881_050 Hb_004881_050 Hb_006114_020--Hb_004881_050 Hb_010180_040 Hb_010180_040 Hb_006114_020--Hb_010180_040 Hb_000335_010 Hb_000335_010 Hb_006114_020--Hb_000335_010 Hb_000029_320--Hb_002070_070 Hb_000029_320--Hb_015763_030 Hb_000029_320--Hb_000209_070 Hb_001473_090 Hb_001473_090 Hb_000029_320--Hb_001473_090 Hb_006882_010--Hb_078477_040 Hb_006882_010--Hb_022250_110 Hb_001901_080 Hb_001901_080 Hb_006882_010--Hb_001901_080 Hb_006882_010--Hb_006002_030 Hb_001196_060 Hb_001196_060 Hb_006882_010--Hb_001196_060 Hb_001437_100 Hb_001437_100 Hb_000300_580--Hb_001437_100 Hb_002043_170 Hb_002043_170 Hb_000300_580--Hb_002043_170 Hb_000300_580--Hb_000335_010 Hb_002883_010 Hb_002883_010 Hb_000300_580--Hb_002883_010 Hb_000250_070 Hb_000250_070 Hb_000300_580--Hb_000250_070 Hb_002070_070--Hb_015763_030 Hb_002070_070--Hb_000209_070 Hb_001040_120 Hb_001040_120 Hb_002070_070--Hb_001040_120 Hb_004218_240 Hb_004218_240 Hb_002070_070--Hb_004218_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
65.0963 26.6005 21.5725 28.2744 96.8854 119.928
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.1896 12.3283 24.8236 34.2843 27.7737

CAGE analysis