Hb_000329_560

Information

Type -
Description -
Location Contig329: 443077-446413
Sequence    

Annotation

kegg
ID rcu:RCOM_1609390
description hypothetical protein
nr
ID XP_002511635.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RD46
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1609390 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000329_560 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005679_070 0.1192082395 - - hypothetical protein M569_07741, partial [Genlisea aurea]
3 Hb_026228_010 0.1243256339 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000074_060 0.1326778151 - - PREDICTED: membrane-associated progesterone-binding protein 4-like [Populus euphratica]
5 Hb_005085_030 0.1401904552 - - PREDICTED: N-acetyltransferase 9-like protein isoform X1 [Jatropha curcas]
6 Hb_004060_030 0.1437439853 - - PREDICTED: primase homolog protein [Jatropha curcas]
7 Hb_006663_090 0.1552354312 - - hypothetical protein B456_010G1255001, partial [Gossypium raimondii]
8 Hb_115477_010 0.1586776381 - - Protein dom-3, putative [Ricinus communis]
9 Hb_168973_010 0.1630424417 - - -
10 Hb_002815_050 0.1662130953 - - PREDICTED: succinate-semialdehyde dehydrogenase, mitochondrial [Populus euphratica]
11 Hb_012627_020 0.1662465049 - - PHYTOCHROME AND FLOWERING TIME 1 family protein [Populus trichocarpa]
12 Hb_008447_030 0.1671464459 - - -
13 Hb_000810_020 0.1736170948 - - -
14 Hb_009119_020 0.173727478 - - hypothetical protein CISIN_1g033708mg [Citrus sinensis]
15 Hb_008096_030 0.1743087328 - - PREDICTED: uncharacterized protein LOC105638438 [Jatropha curcas]
16 Hb_149225_010 0.1749077841 - - DNA-directed RNA polymerase II subunit rpb4, putative isoform 4, partial [Theobroma cacao]
17 Hb_000160_160 0.1752508018 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Jatropha curcas]
18 Hb_006274_040 0.1755356632 - - PREDICTED: DENN domain and WD repeat-containing protein SCD1-like [Fragaria vesca subsp. vesca]
19 Hb_026745_020 0.1800083807 - - PREDICTED: rhodanese-like domain-containing protein 8, chloroplastic [Jatropha curcas]
20 Hb_004709_020 0.1803345251 - - PREDICTED: putative threonine aspartase [Jatropha curcas]

Gene co-expression network

sample Hb_000329_560 Hb_000329_560 Hb_005679_070 Hb_005679_070 Hb_000329_560--Hb_005679_070 Hb_026228_010 Hb_026228_010 Hb_000329_560--Hb_026228_010 Hb_000074_060 Hb_000074_060 Hb_000329_560--Hb_000074_060 Hb_005085_030 Hb_005085_030 Hb_000329_560--Hb_005085_030 Hb_004060_030 Hb_004060_030 Hb_000329_560--Hb_004060_030 Hb_006663_090 Hb_006663_090 Hb_000329_560--Hb_006663_090 Hb_002815_050 Hb_002815_050 Hb_005679_070--Hb_002815_050 Hb_001998_140 Hb_001998_140 Hb_005679_070--Hb_001998_140 Hb_005679_070--Hb_005085_030 Hb_068014_010 Hb_068014_010 Hb_005679_070--Hb_068014_010 Hb_005679_070--Hb_006663_090 Hb_026228_010--Hb_005679_070 Hb_026228_010--Hb_001998_140 Hb_003688_110 Hb_003688_110 Hb_026228_010--Hb_003688_110 Hb_002200_050 Hb_002200_050 Hb_026228_010--Hb_002200_050 Hb_000810_020 Hb_000810_020 Hb_026228_010--Hb_000810_020 Hb_005527_020 Hb_005527_020 Hb_000074_060--Hb_005527_020 Hb_168973_010 Hb_168973_010 Hb_000074_060--Hb_168973_010 Hb_002562_110 Hb_002562_110 Hb_000074_060--Hb_002562_110 Hb_106415_010 Hb_106415_010 Hb_000074_060--Hb_106415_010 Hb_129672_010 Hb_129672_010 Hb_000074_060--Hb_129672_010 Hb_005085_030--Hb_004060_030 Hb_152554_010 Hb_152554_010 Hb_005085_030--Hb_152554_010 Hb_005085_030--Hb_006663_090 Hb_007188_020 Hb_007188_020 Hb_005085_030--Hb_007188_020 Hb_166480_010 Hb_166480_010 Hb_005085_030--Hb_166480_010 Hb_026745_020 Hb_026745_020 Hb_004060_030--Hb_026745_020 Hb_028420_020 Hb_028420_020 Hb_004060_030--Hb_028420_020 Hb_002174_050 Hb_002174_050 Hb_004060_030--Hb_002174_050 Hb_005862_010 Hb_005862_010 Hb_004060_030--Hb_005862_010 Hb_000825_030 Hb_000825_030 Hb_006663_090--Hb_000825_030 Hb_001386_140 Hb_001386_140 Hb_006663_090--Hb_001386_140 Hb_115477_010 Hb_115477_010 Hb_006663_090--Hb_115477_010 Hb_006663_090--Hb_068014_010 Hb_006487_060 Hb_006487_060 Hb_006663_090--Hb_006487_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.868033 0.194615 0.453439 3.7007 0.968592 7.06938
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.07905 1.86481 1.07104 1.7584 2.05592

CAGE analysis