Hb_000329_580

Information

Type -
Description -
Location Contig329: 452309-458682
Sequence    

Annotation

kegg
ID rcu:RCOM_1609380
description malate dehydrogenase, putative (EC:1.1.1.37)
nr
ID XP_002511634.1
description malate dehydrogenase, putative [Ricinus communis]
swissprot
ID Q08062
description Malate dehydrogenase, cytoplasmic OS=Zea mays PE=2 SV=2
trembl
ID B9RD45
description Malate dehydrogenase OS=Ricinus communis GN=RCOM_1609380 PE=3 SV=1
Gene Ontology
ID GO:0016746
description malate cytoplasmic-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34563: 455801-458405 , PASA_asmbl_34565: 457591-458026 , PASA_asmbl_34566: 459461-459975
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000329_580 0.0 - - malate dehydrogenase, putative [Ricinus communis]
2 Hb_019613_010 0.1510682783 - - ubiquitin-protein ligase, putative [Ricinus communis]
3 Hb_003261_010 0.1569346344 - - hypothetical protein POPTR_0067s00200g [Populus trichocarpa]
4 Hb_002968_050 0.1797346553 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
5 Hb_001213_110 0.1911952584 - - SOUL heme-binding family protein [Populus trichocarpa]
6 Hb_000200_360 0.1920423045 - - PREDICTED: reticulon-like protein B14 [Jatropha curcas]
7 Hb_011053_020 0.2028743113 - - lipoic acid synthetase, putative [Ricinus communis]
8 Hb_003377_010 0.2080485454 - - hypothetical protein POPTR_0016s06140g, partial [Populus trichocarpa]
9 Hb_003336_020 0.2086037411 - - PREDICTED: probable sodium/metabolite cotransporter BASS3, chloroplastic [Vitis vinifera]
10 Hb_001959_100 0.2096478481 - - ammonium transporter, putative [Ricinus communis]
11 Hb_000264_040 0.209706052 - - sugar transporter, putative [Ricinus communis]
12 Hb_019845_010 0.2107402562 - - protease inhibitor protein [Hevea brasiliensis]
13 Hb_000473_060 0.2137134391 - - PREDICTED: psbP domain-containing protein 2, chloroplastic [Jatropha curcas]
14 Hb_002759_050 0.2145511183 - - PREDICTED: protein ALTERED XYLOGLUCAN 4 [Jatropha curcas]
15 Hb_000012_010 0.2170025231 - - hypothetical protein JCGZ_07709 [Jatropha curcas]
16 Hb_000445_120 0.2195697294 - - ATP binding protein, putative [Ricinus communis]
17 Hb_000340_240 0.2229613604 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002886_010 0.2242753944 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004545_010 0.2249330638 - - acyl carrier protein [Ricinus communis]
20 Hb_000252_180 0.2252083855 - - Glutamate--glyoxylate aminotransferase 2 [Morus notabilis]

Gene co-expression network

sample Hb_000329_580 Hb_000329_580 Hb_019613_010 Hb_019613_010 Hb_000329_580--Hb_019613_010 Hb_003261_010 Hb_003261_010 Hb_000329_580--Hb_003261_010 Hb_002968_050 Hb_002968_050 Hb_000329_580--Hb_002968_050 Hb_001213_110 Hb_001213_110 Hb_000329_580--Hb_001213_110 Hb_000200_360 Hb_000200_360 Hb_000329_580--Hb_000200_360 Hb_011053_020 Hb_011053_020 Hb_000329_580--Hb_011053_020 Hb_001269_070 Hb_001269_070 Hb_019613_010--Hb_001269_070 Hb_019613_010--Hb_011053_020 Hb_001294_030 Hb_001294_030 Hb_019613_010--Hb_001294_030 Hb_000473_060 Hb_000473_060 Hb_019613_010--Hb_000473_060 Hb_031330_020 Hb_031330_020 Hb_019613_010--Hb_031330_020 Hb_001959_100 Hb_001959_100 Hb_003261_010--Hb_001959_100 Hb_000340_240 Hb_000340_240 Hb_003261_010--Hb_000340_240 Hb_003261_010--Hb_000200_360 Hb_000220_060 Hb_000220_060 Hb_003261_010--Hb_000220_060 Hb_003261_010--Hb_002968_050 Hb_002968_050--Hb_000200_360 Hb_002968_050--Hb_001959_100 Hb_000510_280 Hb_000510_280 Hb_002968_050--Hb_000510_280 Hb_000264_040 Hb_000264_040 Hb_002968_050--Hb_000264_040 Hb_004586_270 Hb_004586_270 Hb_002968_050--Hb_004586_270 Hb_000879_220 Hb_000879_220 Hb_001213_110--Hb_000879_220 Hb_001213_110--Hb_003261_010 Hb_001213_110--Hb_001959_100 Hb_003377_010 Hb_003377_010 Hb_001213_110--Hb_003377_010 Hb_000417_220 Hb_000417_220 Hb_001213_110--Hb_000417_220 Hb_001213_110--Hb_000200_360 Hb_000200_360--Hb_001959_100 Hb_012633_060 Hb_012633_060 Hb_000200_360--Hb_012633_060 Hb_000227_100 Hb_000227_100 Hb_000200_360--Hb_000227_100 Hb_000684_400 Hb_000684_400 Hb_000200_360--Hb_000684_400 Hb_000200_360--Hb_000340_240 Hb_183963_010 Hb_183963_010 Hb_011053_020--Hb_183963_010 Hb_007002_010 Hb_007002_010 Hb_011053_020--Hb_007002_010 Hb_000012_010 Hb_000012_010 Hb_011053_020--Hb_000012_010 Hb_000023_210 Hb_000023_210 Hb_011053_020--Hb_000023_210 Hb_000866_050 Hb_000866_050 Hb_011053_020--Hb_000866_050 Hb_000189_520 Hb_000189_520 Hb_011053_020--Hb_000189_520
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00908864 0 0.527808 1.10393 0 0.00866387
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.289025 0.45484 0.277814 0.0839535 3.61283

CAGE analysis