Hb_000329_600

Information

Type -
Description -
Location Contig329: 468315-469365
Sequence    

Annotation

kegg
ID mdm:103439528
description cell number regulator 6-like
nr
ID XP_011017434.1
description PREDICTED: cell number regulator 6-like isoform X2 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A0A058ZSD7
description Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_L022892 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34570: 468160-469266
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000329_600 0.0 - - PREDICTED: cell number regulator 6-like isoform X2 [Populus euphratica]
2 Hb_005000_290 0.0980444784 transcription factor TF Family: HSF hypothetical protein JCGZ_07430 [Jatropha curcas]
3 Hb_015934_020 0.1062744021 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
4 Hb_001396_220 0.1176232826 - - nuclear transport factor, putative [Ricinus communis]
5 Hb_004453_140 0.1182662223 - - PREDICTED: uncharacterized protein LOC104880181 [Vitis vinifera]
6 Hb_000427_110 0.1191833405 - - PREDICTED: DNA repair protein XRCC2 homolog isoform X2 [Jatropha curcas]
7 Hb_002374_460 0.1222695228 - - conserved hypothetical protein [Ricinus communis]
8 Hb_007810_030 0.1268155903 - - PREDICTED: uncharacterized protein LOC105647693 [Jatropha curcas]
9 Hb_000032_220 0.1284195953 - - PREDICTED: abscisic acid receptor PYL8-like isoform X1 [Jatropha curcas]
10 Hb_001606_070 0.1311340958 - - fimbrin, putative [Ricinus communis]
11 Hb_011457_170 0.1317676839 - - PREDICTED: chlorophyllase-1-like [Jatropha curcas]
12 Hb_010589_040 0.1350780754 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001473_130 0.1354254437 - - PREDICTED: ubiquinone biosynthesis monooxygenase COQ6 [Jatropha curcas]
14 Hb_002387_060 0.1369866195 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001488_100 0.1375581216 - - -
16 Hb_000252_040 0.1385832836 - - PREDICTED: uncharacterized protein LOC105140231 [Populus euphratica]
17 Hb_002248_050 0.1428407466 - - PREDICTED: uncharacterized protein LOC105635697 [Jatropha curcas]
18 Hb_003497_030 0.1436763562 - - ADP-ribosylation factor, putative [Ricinus communis]
19 Hb_001258_080 0.146747159 - - PREDICTED: uncharacterized protein LOC105639921 [Jatropha curcas]
20 Hb_006787_040 0.1468996872 - - polyadenylate-binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000329_600 Hb_000329_600 Hb_005000_290 Hb_005000_290 Hb_000329_600--Hb_005000_290 Hb_015934_020 Hb_015934_020 Hb_000329_600--Hb_015934_020 Hb_001396_220 Hb_001396_220 Hb_000329_600--Hb_001396_220 Hb_004453_140 Hb_004453_140 Hb_000329_600--Hb_004453_140 Hb_000427_110 Hb_000427_110 Hb_000329_600--Hb_000427_110 Hb_002374_460 Hb_002374_460 Hb_000329_600--Hb_002374_460 Hb_005000_290--Hb_015934_020 Hb_025087_010 Hb_025087_010 Hb_005000_290--Hb_025087_010 Hb_183963_020 Hb_183963_020 Hb_005000_290--Hb_183963_020 Hb_007229_060 Hb_007229_060 Hb_005000_290--Hb_007229_060 Hb_002307_090 Hb_002307_090 Hb_005000_290--Hb_002307_090 Hb_007810_030 Hb_007810_030 Hb_015934_020--Hb_007810_030 Hb_002387_060 Hb_002387_060 Hb_015934_020--Hb_002387_060 Hb_000032_220 Hb_000032_220 Hb_015934_020--Hb_000032_220 Hb_000078_010 Hb_000078_010 Hb_015934_020--Hb_000078_010 Hb_002685_090 Hb_002685_090 Hb_015934_020--Hb_002685_090 Hb_001396_220--Hb_000032_220 Hb_001473_130 Hb_001473_130 Hb_001396_220--Hb_001473_130 Hb_001396_220--Hb_015934_020 Hb_002352_010 Hb_002352_010 Hb_001396_220--Hb_002352_010 Hb_001396_220--Hb_005000_290 Hb_002983_030 Hb_002983_030 Hb_004453_140--Hb_002983_030 Hb_004453_140--Hb_015934_020 Hb_000193_240 Hb_000193_240 Hb_004453_140--Hb_000193_240 Hb_001143_090 Hb_001143_090 Hb_004453_140--Hb_001143_090 Hb_011457_170 Hb_011457_170 Hb_004453_140--Hb_011457_170 Hb_000427_110--Hb_002352_010 Hb_000427_110--Hb_001473_130 Hb_001191_100 Hb_001191_100 Hb_000427_110--Hb_001191_100 Hb_002326_030 Hb_002326_030 Hb_000427_110--Hb_002326_030 Hb_001606_070 Hb_001606_070 Hb_000427_110--Hb_001606_070 Hb_026988_020 Hb_026988_020 Hb_000427_110--Hb_026988_020 Hb_002374_460--Hb_005000_290 Hb_000252_040 Hb_000252_040 Hb_002374_460--Hb_000252_040 Hb_002374_460--Hb_015934_020 Hb_002374_460--Hb_004453_140 Hb_000111_280 Hb_000111_280 Hb_002374_460--Hb_000111_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
62.2836 0.57788 4.24924 8.68974 71.1898 121.839
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
106.579 152.198 174.362 27.0742 3.08728

CAGE analysis