Hb_000329_610

Information

Type -
Description -
Location Contig329: 476946-478497
Sequence    

Annotation

kegg
ID rcu:RCOM_1609360
description hypothetical protein
nr
ID XP_002511632.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID B6SGC5
description Cell number regulator 6 OS=Zea mays GN=CNR6 PE=2 SV=1
trembl
ID B9RD43
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1609360 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34571: 477417-478668
cDNA
(Sanger)
(ID:Location)		 036_J19r.ab1: 479249-480288 , 039_N12r.ab1: 479256-480264

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000329_610 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003786_110 0.0904662255 - - PREDICTED: uncharacterized protein LOC105639617 [Jatropha curcas]
3 Hb_017134_040 0.093239871 - - hypothetical protein AALP_AA3G042000 [Arabis alpina]
4 Hb_000853_370 0.1142492039 - - PREDICTED: uncharacterized protein LOC105642590 [Jatropha curcas]
5 Hb_001504_170 0.1146146331 - - plant poly(A)+ RNA export protein, putative [Ricinus communis]
6 Hb_180992_010 0.1166065035 - - hypothetical protein POPTR_0010s24060g [Populus trichocarpa]
7 Hb_003507_020 0.1201385757 - - PREDICTED: uncharacterized protein LOC105641595 [Jatropha curcas]
8 Hb_005063_010 0.1213334337 - - HEV1.1 [Hevea brasiliensis]
9 Hb_003627_020 0.1229733954 - - PREDICTED: probable calcium-binding protein CML49 [Jatropha curcas]
10 Hb_007178_010 0.1283789486 - - pseudo-hevein [Hevea brasiliensis]
11 Hb_002200_110 0.1289422846 - - conserved hypothetical protein [Ricinus communis]
12 Hb_026048_090 0.1295078515 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001252_160 0.1304094685 - - PREDICTED: PRA1 family protein A3 [Jatropha curcas]
14 Hb_005730_020 0.1309696486 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF3.1-like [Jatropha curcas]
15 Hb_001115_050 0.1313759683 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
16 Hb_000933_140 0.1322240613 - - PREDICTED: uncharacterized protein LOC105630501 [Jatropha curcas]
17 Hb_001911_030 0.1332861268 - - PREDICTED: disease resistance RPP8-like protein 3 [Jatropha curcas]
18 Hb_002232_180 0.1337597271 - - PREDICTED: DUF21 domain-containing protein At2g14520-like isoform X1 [Populus euphratica]
19 Hb_043637_010 0.1359284281 transcription factor TF Family: zf-HD hypothetical protein POPTR_0015s05220g, partial [Populus trichocarpa]
20 Hb_001628_110 0.1369017758 - - PREDICTED: synaptotagmin-2 [Jatropha curcas]

Gene co-expression network

sample Hb_000329_610 Hb_000329_610 Hb_003786_110 Hb_003786_110 Hb_000329_610--Hb_003786_110 Hb_017134_040 Hb_017134_040 Hb_000329_610--Hb_017134_040 Hb_000853_370 Hb_000853_370 Hb_000329_610--Hb_000853_370 Hb_001504_170 Hb_001504_170 Hb_000329_610--Hb_001504_170 Hb_180992_010 Hb_180992_010 Hb_000329_610--Hb_180992_010 Hb_003507_020 Hb_003507_020 Hb_000329_610--Hb_003507_020 Hb_003786_110--Hb_017134_040 Hb_003786_110--Hb_001504_170 Hb_007178_010 Hb_007178_010 Hb_003786_110--Hb_007178_010 Hb_026048_090 Hb_026048_090 Hb_003786_110--Hb_026048_090 Hb_002067_160 Hb_002067_160 Hb_003786_110--Hb_002067_160 Hb_005730_020 Hb_005730_020 Hb_017134_040--Hb_005730_020 Hb_002890_220 Hb_002890_220 Hb_017134_040--Hb_002890_220 Hb_017134_040--Hb_007178_010 Hb_005063_010 Hb_005063_010 Hb_017134_040--Hb_005063_010 Hb_000853_370--Hb_003507_020 Hb_003627_020 Hb_003627_020 Hb_000853_370--Hb_003627_020 Hb_014067_010 Hb_014067_010 Hb_000853_370--Hb_014067_010 Hb_050964_020 Hb_050964_020 Hb_000853_370--Hb_050964_020 Hb_000853_370--Hb_007178_010 Hb_154381_050 Hb_154381_050 Hb_000853_370--Hb_154381_050 Hb_013479_020 Hb_013479_020 Hb_001504_170--Hb_013479_020 Hb_002942_030 Hb_002942_030 Hb_001504_170--Hb_002942_030 Hb_002955_030 Hb_002955_030 Hb_001504_170--Hb_002955_030 Hb_000345_560 Hb_000345_560 Hb_001504_170--Hb_000345_560 Hb_001220_040 Hb_001220_040 Hb_180992_010--Hb_001220_040 Hb_000933_140 Hb_000933_140 Hb_180992_010--Hb_000933_140 Hb_005348_080 Hb_005348_080 Hb_180992_010--Hb_005348_080 Hb_004295_020 Hb_004295_020 Hb_180992_010--Hb_004295_020 Hb_000061_160 Hb_000061_160 Hb_180992_010--Hb_000061_160 Hb_043637_010 Hb_043637_010 Hb_003507_020--Hb_043637_010 Hb_000603_200 Hb_000603_200 Hb_003507_020--Hb_000603_200 Hb_001252_160 Hb_001252_160 Hb_003507_020--Hb_001252_160 Hb_003507_020--Hb_003627_020 Hb_007810_040 Hb_007810_040 Hb_003507_020--Hb_007810_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
151.944 2.28342 7.84666 6.69251 211.102 170.52
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
93.775 127.224 80.3684 16.1256 0

CAGE analysis