Hb_000329_620

Information

Type -
Description -
Location Contig329: 479079-480193
Sequence    

Annotation

kegg
ID pop:POPTR_0014s05630g
description hypothetical protein
nr
ID XP_012083690.1
description PREDICTED: uncharacterized protein LOC105643215 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KAL0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14620 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34572: 479013-480417
cDNA
(Sanger)
(ID:Location)		 002_P21.ab1: 479029-480022 , 004_D11.ab1: 479081-480194 , 005_K20.ab1: 479081-480148 , 010_E02.ab1: 479029-480137 , 036_J19.ab1: 479082-480156 , 039_N12.ab1: 479029-479980 , 052_F20.ab1: 479029-480097

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000329_620 0.0 - - PREDICTED: uncharacterized protein LOC105643215 [Jatropha curcas]
2 Hb_007158_030 0.0922099582 - - UDP-glucosyltransferase, putative [Ricinus communis]
3 Hb_029464_010 0.093123725 - - PREDICTED: zeatin O-glucosyltransferase-like [Jatropha curcas]
4 Hb_009193_130 0.1052858866 - - hypothetical protein RCOM_1620550 [Ricinus communis]
5 Hb_002835_190 0.105461027 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
6 Hb_005271_030 0.1078983919 - - copper-transporting atpase p-type, putative [Ricinus communis]
7 Hb_001252_160 0.1100806602 - - PREDICTED: PRA1 family protein A3 [Jatropha curcas]
8 Hb_043637_010 0.1134584552 transcription factor TF Family: zf-HD hypothetical protein POPTR_0015s05220g, partial [Populus trichocarpa]
9 Hb_000603_200 0.1208099056 - - PREDICTED: myosin-15 [Jatropha curcas]
10 Hb_001635_220 0.1224071315 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH87 [Jatropha curcas]
11 Hb_003913_100 0.1262973394 - - copper amine oxidase, putative [Ricinus communis]
12 Hb_064201_010 0.1274898423 - - hypothetical protein RCOM_1685970 [Ricinus communis]
13 Hb_000856_100 0.1301213081 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
14 Hb_098315_100 0.1317317831 - - PREDICTED: uncharacterized protein LOC105636025 isoform X1 [Jatropha curcas]
15 Hb_003304_080 0.131737677 transcription factor TF Family: bHLH lMYC3 [Hevea brasiliensis]
16 Hb_000376_150 0.1317688029 - - O-acyltransferase WSD1 [Gossypium arboreum]
17 Hb_001146_070 0.1320714072 transcription factor TF Family: bHLH LMYC2 [Hevea brasiliensis]
18 Hb_004657_010 0.1323081094 - - PREDICTED: uncharacterized protein LOC105639764 [Jatropha curcas]
19 Hb_000483_370 0.1351511139 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001628_110 0.1369577037 - - PREDICTED: synaptotagmin-2 [Jatropha curcas]

Gene co-expression network

sample Hb_000329_620 Hb_000329_620 Hb_007158_030 Hb_007158_030 Hb_000329_620--Hb_007158_030 Hb_029464_010 Hb_029464_010 Hb_000329_620--Hb_029464_010 Hb_009193_130 Hb_009193_130 Hb_000329_620--Hb_009193_130 Hb_002835_190 Hb_002835_190 Hb_000329_620--Hb_002835_190 Hb_005271_030 Hb_005271_030 Hb_000329_620--Hb_005271_030 Hb_001252_160 Hb_001252_160 Hb_000329_620--Hb_001252_160 Hb_007158_030--Hb_029464_010 Hb_007158_030--Hb_009193_130 Hb_007158_030--Hb_005271_030 Hb_002506_110 Hb_002506_110 Hb_007158_030--Hb_002506_110 Hb_000603_200 Hb_000603_200 Hb_007158_030--Hb_000603_200 Hb_029464_010--Hb_009193_130 Hb_029464_010--Hb_005271_030 Hb_001146_070 Hb_001146_070 Hb_029464_010--Hb_001146_070 Hb_000856_100 Hb_000856_100 Hb_029464_010--Hb_000856_100 Hb_009193_130--Hb_000856_100 Hb_009193_130--Hb_005271_030 Hb_098315_100 Hb_098315_100 Hb_009193_130--Hb_098315_100 Hb_009193_130--Hb_002506_110 Hb_003913_100 Hb_003913_100 Hb_002835_190--Hb_003913_100 Hb_002835_190--Hb_001252_160 Hb_005496_060 Hb_005496_060 Hb_002835_190--Hb_005496_060 Hb_002942_030 Hb_002942_030 Hb_002835_190--Hb_002942_030 Hb_013479_020 Hb_013479_020 Hb_002835_190--Hb_013479_020 Hb_005271_030--Hb_001146_070 Hb_005271_030--Hb_002506_110 Hb_001017_100 Hb_001017_100 Hb_005271_030--Hb_001017_100 Hb_001252_160--Hb_000603_200 Hb_003507_020 Hb_003507_020 Hb_001252_160--Hb_003507_020 Hb_000061_410 Hb_000061_410 Hb_001252_160--Hb_000061_410 Hb_003627_020 Hb_003627_020 Hb_001252_160--Hb_003627_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1999.13 29.3177 4.42117 22.3935 2515.34 1876.69
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1141.1 441.528 426.071 106.157 11.6944

CAGE analysis