Hb_000329_630

Information

Type -
Description -
Location Contig329: 480240-491446
Sequence    

Annotation

kegg
ID rcu:RCOM_1609340
description structural constituent of nuclear pore, putative
nr
ID XP_012067823.1
description PREDICTED: nuclear pore complex protein NUP62 [Jatropha curcas]
swissprot
ID P17955
description Nuclear pore glycoprotein p62 OS=Rattus norvegicus GN=Nup62 PE=1 SV=1
trembl
ID A0A067KYS2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15753 PE=4 SV=1
Gene Ontology
ID GO:0005635
description nuclear pore complex protein nup62

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34573: 480276-491346
cDNA
(Sanger)
(ID:Location)		 036_J19r.ab1: 479249-480288 , 039_N12r.ab1: 479256-480264

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000329_630 0.0 - - PREDICTED: nuclear pore complex protein NUP62 [Jatropha curcas]
2 Hb_005054_290 0.0731313098 - - PREDICTED: eukaryotic translation initiation factor 3 subunit F [Jatropha curcas]
3 Hb_001439_100 0.0761349006 - - PREDICTED: SNF1-related protein kinase catalytic subunit alpha KIN10 [Jatropha curcas]
4 Hb_000571_120 0.0861810665 - - importin beta-1, putative [Ricinus communis]
5 Hb_000445_420 0.0894510241 - - protein transporter, putative [Ricinus communis]
6 Hb_000329_650 0.0905709969 - - hypothetical protein POPTR_0014s056001g, partial [Populus trichocarpa]
7 Hb_000000_460 0.0911189804 - - PREDICTED: peroxisomal membrane protein 11A [Jatropha curcas]
8 Hb_005329_020 0.0914357219 - - PREDICTED: U-box domain-containing protein 8 [Jatropha curcas]
9 Hb_000696_340 0.0926092172 - - PREDICTED: uncharacterized protein LOC105647255 [Jatropha curcas]
10 Hb_011883_010 0.0935375141 - - PREDICTED: RNA-binding protein 7 isoform X1 [Jatropha curcas]
11 Hb_093084_050 0.0940438094 - - PREDICTED: uncharacterized protein LOC105640739 [Jatropha curcas]
12 Hb_017224_030 0.0941252254 - - PREDICTED: A-agglutinin anchorage subunit [Jatropha curcas]
13 Hb_000347_030 0.0950723606 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 [Jatropha curcas]
14 Hb_000015_040 0.0983473288 - - PREDICTED: uncharacterized protein LOC105647937 isoform X2 [Jatropha curcas]
15 Hb_000003_480 0.0990579229 - - PREDICTED: nuclear pore complex protein NUP35 [Jatropha curcas]
16 Hb_000221_210 0.0991271396 - - Kinase superfamily protein isoform 2 [Theobroma cacao]
17 Hb_000252_200 0.1014063406 - - conserved hypothetical protein [Ricinus communis]
18 Hb_012022_030 0.1017189269 transcription factor TF Family: Alfin-like phd/F-box containing protein, putative [Ricinus communis]
19 Hb_000230_270 0.1026302368 - - PREDICTED: peptide methionine sulfoxide reductase B5-like [Jatropha curcas]
20 Hb_000656_110 0.1031397239 - - nucleolysin tia-1, putative [Ricinus communis]

Gene co-expression network

sample Hb_000329_630 Hb_000329_630 Hb_005054_290 Hb_005054_290 Hb_000329_630--Hb_005054_290 Hb_001439_100 Hb_001439_100 Hb_000329_630--Hb_001439_100 Hb_000571_120 Hb_000571_120 Hb_000329_630--Hb_000571_120 Hb_000445_420 Hb_000445_420 Hb_000329_630--Hb_000445_420 Hb_000329_650 Hb_000329_650 Hb_000329_630--Hb_000329_650 Hb_000000_460 Hb_000000_460 Hb_000329_630--Hb_000000_460 Hb_005054_290--Hb_000000_460 Hb_005054_290--Hb_001439_100 Hb_001102_140 Hb_001102_140 Hb_005054_290--Hb_001102_140 Hb_000003_480 Hb_000003_480 Hb_005054_290--Hb_000003_480 Hb_000023_280 Hb_000023_280 Hb_005054_290--Hb_000023_280 Hb_029584_050 Hb_029584_050 Hb_001439_100--Hb_029584_050 Hb_000015_040 Hb_000015_040 Hb_001439_100--Hb_000015_040 Hb_001439_100--Hb_000000_460 Hb_000230_270 Hb_000230_270 Hb_001439_100--Hb_000230_270 Hb_002026_180 Hb_002026_180 Hb_000571_120--Hb_002026_180 Hb_002137_020 Hb_002137_020 Hb_000571_120--Hb_002137_020 Hb_007441_200 Hb_007441_200 Hb_000571_120--Hb_007441_200 Hb_000953_020 Hb_000953_020 Hb_000571_120--Hb_000953_020 Hb_000768_040 Hb_000768_040 Hb_000571_120--Hb_000768_040 Hb_000805_020 Hb_000805_020 Hb_000571_120--Hb_000805_020 Hb_007441_120 Hb_007441_120 Hb_000445_420--Hb_007441_120 Hb_005663_060 Hb_005663_060 Hb_000445_420--Hb_005663_060 Hb_002016_110 Hb_002016_110 Hb_000445_420--Hb_002016_110 Hb_004055_030 Hb_004055_030 Hb_000445_420--Hb_004055_030 Hb_006922_100 Hb_006922_100 Hb_000445_420--Hb_006922_100 Hb_010931_120 Hb_010931_120 Hb_000445_420--Hb_010931_120 Hb_000923_050 Hb_000923_050 Hb_000329_650--Hb_000923_050 Hb_000696_340 Hb_000696_340 Hb_000329_650--Hb_000696_340 Hb_005329_020 Hb_005329_020 Hb_000329_650--Hb_005329_020 Hb_005056_060 Hb_005056_060 Hb_000329_650--Hb_005056_060 Hb_002333_080 Hb_002333_080 Hb_000329_650--Hb_002333_080 Hb_000000_460--Hb_001102_140 Hb_000705_210 Hb_000705_210 Hb_000000_460--Hb_000705_210 Hb_000679_010 Hb_000679_010 Hb_000000_460--Hb_000679_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.8915 19.8605 7.77432 15.5405 11.9319 25.7984
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
44.9758 22.5076 25.6062 24.8572 10.8173

CAGE analysis