Hb_000329_710

Information

Type -
Description -
Location Contig329: 532758-546223
Sequence    

Annotation

kegg
ID pop:POPTR_0014s05510g
description hypothetical protein
nr
ID XP_012083683.1
description PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1 isoform X1 [Jatropha curcas]
swissprot
ID Q8RXD6
description E3 ubiquitin-protein ligase BRE1-like 1 OS=Arabidopsis thaliana GN=HUB1 PE=1 SV=1
trembl
ID A0A067K1D5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14614 PE=4 SV=1
Gene Ontology
ID GO:0005739
description e3 ubiquitin-protein ligase bre1-like 1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34574: 532816-539629 , PASA_asmbl_34575: 535705-546199 , PASA_asmbl_34576: 535705-546199 , PASA_asmbl_34577: 543224-543473 , PASA_asmbl_34580: 540028-540207
cDNA
(Sanger)
(ID:Location)		 005_J16.ab1: 532816-535428

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000329_710 0.0 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1 isoform X1 [Jatropha curcas]
2 Hb_000792_010 0.0420444623 - - PREDICTED: mRNA-capping enzyme [Jatropha curcas]
3 Hb_011386_010 0.0475892094 - - mitochondrial carrier protein, putative [Ricinus communis]
4 Hb_001004_060 0.0503717531 - - PREDICTED: uncharacterized protein LOC105630220 isoform X4 [Jatropha curcas]
5 Hb_002518_260 0.0525790506 - - PREDICTED: zinc finger CCCH domain-containing protein 40-like [Jatropha curcas]
6 Hb_009486_140 0.0579623715 - - PREDICTED: uncharacterized protein LOC105643248 [Jatropha curcas]
7 Hb_000041_110 0.0623414862 - - PREDICTED: WW domain-binding protein 11 isoform X1 [Jatropha curcas]
8 Hb_167498_010 0.0648250749 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
9 Hb_000317_050 0.0677209593 - - formiminotransferase-cyclodeaminase, putative [Ricinus communis]
10 Hb_001546_080 0.0678100121 - - PREDICTED: transcription initiation factor TFIID subunit 12b isoform X1 [Jatropha curcas]
11 Hb_009767_110 0.0687829496 - - -
12 Hb_015934_040 0.0697864762 - - PREDICTED: protein Hook homolog 3-like [Jatropha curcas]
13 Hb_019863_070 0.069993664 - - PREDICTED: regulatory-associated protein of TOR 1 isoform X1 [Jatropha curcas]
14 Hb_000318_250 0.070449907 - - PREDICTED: uncharacterized protein LOC105634251 [Jatropha curcas]
15 Hb_000028_480 0.071230672 - - PREDICTED: putative 3,4-dihydroxy-2-butanone kinase [Jatropha curcas]
16 Hb_002078_350 0.0718634967 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
17 Hb_003494_020 0.0721170223 - - ATP-dependent RNA and DNA helicase, putative [Ricinus communis]
18 Hb_156279_020 0.0721614019 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
19 Hb_000111_290 0.0721877242 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
20 Hb_002263_020 0.072395635 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]

Gene co-expression network

sample Hb_000329_710 Hb_000329_710 Hb_000792_010 Hb_000792_010 Hb_000329_710--Hb_000792_010 Hb_011386_010 Hb_011386_010 Hb_000329_710--Hb_011386_010 Hb_001004_060 Hb_001004_060 Hb_000329_710--Hb_001004_060 Hb_002518_260 Hb_002518_260 Hb_000329_710--Hb_002518_260 Hb_009486_140 Hb_009486_140 Hb_000329_710--Hb_009486_140 Hb_000041_110 Hb_000041_110 Hb_000329_710--Hb_000041_110 Hb_000792_010--Hb_002518_260 Hb_000028_480 Hb_000028_480 Hb_000792_010--Hb_000028_480 Hb_003411_040 Hb_003411_040 Hb_000792_010--Hb_003411_040 Hb_000792_010--Hb_001004_060 Hb_000792_010--Hb_011386_010 Hb_005054_110 Hb_005054_110 Hb_011386_010--Hb_005054_110 Hb_002078_350 Hb_002078_350 Hb_011386_010--Hb_002078_350 Hb_011386_010--Hb_002518_260 Hb_156279_020 Hb_156279_020 Hb_011386_010--Hb_156279_020 Hb_000327_270 Hb_000327_270 Hb_001004_060--Hb_000327_270 Hb_001999_290 Hb_001999_290 Hb_001004_060--Hb_001999_290 Hb_001205_230 Hb_001205_230 Hb_001004_060--Hb_001205_230 Hb_005736_020 Hb_005736_020 Hb_001004_060--Hb_005736_020 Hb_002518_260--Hb_000041_110 Hb_002518_260--Hb_000028_480 Hb_002518_260--Hb_009486_140 Hb_009486_140--Hb_000041_110 Hb_009486_140--Hb_011386_010 Hb_009486_140--Hb_156279_020 Hb_009486_140--Hb_005054_110 Hb_000258_160 Hb_000258_160 Hb_000041_110--Hb_000258_160 Hb_000297_010 Hb_000297_010 Hb_000041_110--Hb_000297_010 Hb_000041_110--Hb_000792_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.3683 16.8528 10.2321 11.164 12.6039 15.9611
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.336 17.6671 15.9427 15.1534 17.8872

CAGE analysis