Hb_000329_750

Information

Type -
Description -
Location Contig329: 564983-570229
Sequence    

Annotation

kegg
ID pop:POPTR_0014s05410g
description hypothetical protein
nr
ID XP_012083677.1
description PREDICTED: uncharacterized protein LOC105643205 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K1D1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14609 PE=4 SV=1
Gene Ontology
ID GO:0008270
description zinc ion binding protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34583: 563330-565638 , PASA_asmbl_34585: 566677-567755
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000329_750 0.0 - - PREDICTED: uncharacterized protein LOC105643205 [Jatropha curcas]
2 Hb_005348_010 0.0462682469 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003805_050 0.0764786695 - - -
4 Hb_006295_020 0.0780526614 - - PREDICTED: serine/threonine-protein kinase ATR isoform X1 [Jatropha curcas]
5 Hb_005488_170 0.0818335389 - - PREDICTED: septin and tuftelin-interacting protein 1 homolog 1 [Jatropha curcas]
6 Hb_003203_030 0.0830356868 - - PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Jatropha curcas]
7 Hb_002909_120 0.0865282715 - - PREDICTED: transcription elongation factor SPT6 [Jatropha curcas]
8 Hb_000046_190 0.0866569992 - - PREDICTED: uncharacterized protein LOC105647118 [Jatropha curcas]
9 Hb_000083_070 0.0868447718 - - PREDICTED: transcription initiation factor TFIID subunit 1 isoform X2 [Jatropha curcas]
10 Hb_002600_060 0.0907913068 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
11 Hb_000672_040 0.0920091665 - - PREDICTED: ENHANCER OF AG-4 protein 2 [Jatropha curcas]
12 Hb_000656_060 0.0943707706 - - DNA binding protein, putative [Ricinus communis]
13 Hb_001726_050 0.0948523116 transcription factor TF Family: C3H Nucleic acid binding,zinc ion binding,DNA binding, putative isoform 1 [Theobroma cacao]
14 Hb_099270_030 0.0949691416 transcription factor TF Family: PHD PREDICTED: protein CHROMATIN REMODELING 4 isoform X2 [Jatropha curcas]
15 Hb_003506_050 0.0956664468 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_000265_230 0.096356754 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105643603 isoform X1 [Jatropha curcas]
17 Hb_000041_090 0.0973283769 - - PREDICTED: uncharacterized protein LOC105641452 [Jatropha curcas]
18 Hb_005486_030 0.0976878313 transcription factor TF Family: PHD hypothetical protein POPTR_0017s10890g [Populus trichocarpa]
19 Hb_000906_100 0.0977686648 - - PREDICTED: uncharacterized protein LOC105648070 [Jatropha curcas]
20 Hb_156279_010 0.0979505997 transcription factor TF Family: Jumonji PREDICTED: uncharacterized protein LOC105641053 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000329_750 Hb_000329_750 Hb_005348_010 Hb_005348_010 Hb_000329_750--Hb_005348_010 Hb_003805_050 Hb_003805_050 Hb_000329_750--Hb_003805_050 Hb_006295_020 Hb_006295_020 Hb_000329_750--Hb_006295_020 Hb_005488_170 Hb_005488_170 Hb_000329_750--Hb_005488_170 Hb_003203_030 Hb_003203_030 Hb_000329_750--Hb_003203_030 Hb_002909_120 Hb_002909_120 Hb_000329_750--Hb_002909_120 Hb_005348_010--Hb_003805_050 Hb_005348_010--Hb_006295_020 Hb_005348_010--Hb_003203_030 Hb_005348_010--Hb_005488_170 Hb_005348_010--Hb_002909_120 Hb_000083_070 Hb_000083_070 Hb_003805_050--Hb_000083_070 Hb_002095_070 Hb_002095_070 Hb_003805_050--Hb_002095_070 Hb_024185_010 Hb_024185_010 Hb_003805_050--Hb_024185_010 Hb_003805_050--Hb_006295_020 Hb_006295_020--Hb_000083_070 Hb_000041_090 Hb_000041_090 Hb_006295_020--Hb_000041_090 Hb_000265_230 Hb_000265_230 Hb_006295_020--Hb_000265_230 Hb_006295_020--Hb_003203_030 Hb_002600_060 Hb_002600_060 Hb_005488_170--Hb_002600_060 Hb_005701_130 Hb_005701_130 Hb_005488_170--Hb_005701_130 Hb_005488_170--Hb_002909_120 Hb_010998_020 Hb_010998_020 Hb_005488_170--Hb_010998_020 Hb_012053_090 Hb_012053_090 Hb_005488_170--Hb_012053_090 Hb_000331_560 Hb_000331_560 Hb_003203_030--Hb_000331_560 Hb_018118_010 Hb_018118_010 Hb_003203_030--Hb_018118_010 Hb_006816_430 Hb_006816_430 Hb_003203_030--Hb_006816_430 Hb_001862_180 Hb_001862_180 Hb_003203_030--Hb_001862_180 Hb_001259_020 Hb_001259_020 Hb_003203_030--Hb_001259_020 Hb_002333_050 Hb_002333_050 Hb_002909_120--Hb_002333_050 Hb_000046_190 Hb_000046_190 Hb_002909_120--Hb_000046_190 Hb_003119_080 Hb_003119_080 Hb_002909_120--Hb_003119_080 Hb_009486_170 Hb_009486_170 Hb_002909_120--Hb_009486_170 Hb_188063_010 Hb_188063_010 Hb_002909_120--Hb_188063_010 Hb_001133_030 Hb_001133_030 Hb_002909_120--Hb_001133_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.53582 5.55288 1.70001 1.62406 3.95454 3.4217
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.94092 2.17105 3.00733 3.62092 7.75722

CAGE analysis