Hb_000329_760

Information

Type -
Description -
Location Contig329: 570202-574307
Sequence    

Annotation

kegg
ID rcu:RCOM_1609100
description Import inner membrane translocase subunit tim21, mitochondrial precursor, putative
nr
ID XP_012083676.1
description PREDICTED: probable mitochondrial import inner membrane translocase subunit TIM21 [Jatropha curcas]
swissprot
ID Q1G3L1
description Probable mitochondrial import inner membrane translocase subunit TIM21 OS=Arabidopsis thaliana GN=TIM21 PE=1 SV=1
trembl
ID B9RD27
description Import inner membrane translocase subunit tim21, mitochondrial, putative OS=Ricinus communis GN=RCOM_1609100 PE=4 SV=1
Gene Ontology
ID GO:0005744
description probable mitochondrial import inner membrane translocase subunit tim21

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34586: 570197-574303
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000329_760 0.0 - - PREDICTED: probable mitochondrial import inner membrane translocase subunit TIM21 [Jatropha curcas]
2 Hb_002631_030 0.0723488392 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001414_030 0.0814252882 - - PREDICTED: aspartate-semialdehyde dehydrogenase [Jatropha curcas]
4 Hb_012490_070 0.0868411022 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001195_200 0.0869003627 - - PREDICTED: uncharacterized protein LOC105633802 [Jatropha curcas]
6 Hb_000258_260 0.0872688733 - - PREDICTED: protein HGH1 homolog [Jatropha curcas]
7 Hb_002014_020 0.087328586 - - PREDICTED: protein Mpv17 isoform X2 [Jatropha curcas]
8 Hb_000460_030 0.0892795467 - - 4-hydroxybenzoate octaprenyltransferase, putative [Ricinus communis]
9 Hb_002197_050 0.095049473 - - hypothetical protein CICLE_v10002157mg [Citrus clementina]
10 Hb_014720_110 0.0954090991 - - PREDICTED: GDSL esterase/lipase At5g62930 [Tarenaya hassleriana]
11 Hb_005914_170 0.0960998955 - - PREDICTED: eukaryotic translation initiation factor isoform 4E-2-like [Gossypium raimondii]
12 Hb_001545_170 0.0966682769 - - PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
13 Hb_003994_260 0.0980807501 - - PREDICTED: uncharacterized protein LOC105646151 [Jatropha curcas]
14 Hb_001386_040 0.0987029074 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 511 [Jatropha curcas]
15 Hb_005446_010 0.0988434793 - - PREDICTED: zinc finger protein 830 [Jatropha curcas]
16 Hb_010098_050 0.0998403917 - - PREDICTED: putative deoxyribonuclease tatdn3-A [Jatropha curcas]
17 Hb_000982_080 0.0999759869 desease resistance Gene Name: AAA PREDICTED: 26S proteasome regulatory subunit 4 homolog A [Jatropha curcas]
18 Hb_000948_160 0.101275477 - - PREDICTED: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic [Jatropha curcas]
19 Hb_004586_420 0.1022349922 - - PREDICTED: uncharacterized protein LOC105630659 [Jatropha curcas]
20 Hb_003678_020 0.1022992716 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000329_760 Hb_000329_760 Hb_002631_030 Hb_002631_030 Hb_000329_760--Hb_002631_030 Hb_001414_030 Hb_001414_030 Hb_000329_760--Hb_001414_030 Hb_012490_070 Hb_012490_070 Hb_000329_760--Hb_012490_070 Hb_001195_200 Hb_001195_200 Hb_000329_760--Hb_001195_200 Hb_000258_260 Hb_000258_260 Hb_000329_760--Hb_000258_260 Hb_002014_020 Hb_002014_020 Hb_000329_760--Hb_002014_020 Hb_001946_290 Hb_001946_290 Hb_002631_030--Hb_001946_290 Hb_000137_090 Hb_000137_090 Hb_002631_030--Hb_000137_090 Hb_000460_030 Hb_000460_030 Hb_002631_030--Hb_000460_030 Hb_002006_030 Hb_002006_030 Hb_002631_030--Hb_002006_030 Hb_031340_050 Hb_031340_050 Hb_002631_030--Hb_031340_050 Hb_016522_010 Hb_016522_010 Hb_001414_030--Hb_016522_010 Hb_000982_080 Hb_000982_080 Hb_001414_030--Hb_000982_080 Hb_034380_020 Hb_034380_020 Hb_001414_030--Hb_034380_020 Hb_001357_300 Hb_001357_300 Hb_001414_030--Hb_001357_300 Hb_011942_090 Hb_011942_090 Hb_001414_030--Hb_011942_090 Hb_001545_170 Hb_001545_170 Hb_012490_070--Hb_001545_170 Hb_000250_060 Hb_000250_060 Hb_012490_070--Hb_000250_060 Hb_005539_280 Hb_005539_280 Hb_012490_070--Hb_005539_280 Hb_000120_460 Hb_000120_460 Hb_012490_070--Hb_000120_460 Hb_002197_050 Hb_002197_050 Hb_012490_070--Hb_002197_050 Hb_012490_070--Hb_000258_260 Hb_001195_200--Hb_000982_080 Hb_003768_030 Hb_003768_030 Hb_001195_200--Hb_003768_030 Hb_001489_090 Hb_001489_090 Hb_001195_200--Hb_001489_090 Hb_000327_180 Hb_000327_180 Hb_001195_200--Hb_000327_180 Hb_003376_250 Hb_003376_250 Hb_001195_200--Hb_003376_250 Hb_001195_200--Hb_000258_260 Hb_003994_260 Hb_003994_260 Hb_000258_260--Hb_003994_260 Hb_000069_420 Hb_000069_420 Hb_000258_260--Hb_000069_420 Hb_000258_260--Hb_000982_080 Hb_034406_030 Hb_034406_030 Hb_000258_260--Hb_034406_030 Hb_000236_040 Hb_000236_040 Hb_002014_020--Hb_000236_040 Hb_031862_100 Hb_031862_100 Hb_002014_020--Hb_031862_100 Hb_004889_010 Hb_004889_010 Hb_002014_020--Hb_004889_010 Hb_002014_020--Hb_034380_020 Hb_001218_030 Hb_001218_030 Hb_002014_020--Hb_001218_030 Hb_001828_150 Hb_001828_150 Hb_002014_020--Hb_001828_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.83631 3.3877 5.51754 3.91646 3.31537 3.9098
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.91489 10.5454 6.97649 10.0949 5.406

CAGE analysis