Hb_000329_770

Information

Type -
Description -
Location Contig329: 575188-575918
Sequence    

Annotation

kegg
ID rcu:RCOM_1609090
description hypothetical protein
nr
ID XP_002511615.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RD26
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1609090 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34588: 575039-575914 , PASA_asmbl_34589: 575201-575515 , PASA_asmbl_34591: 576756-577729
cDNA
(Sanger)
(ID:Location)		 011_L22.ab1: 575039-575914

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000329_770 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_015057_010 0.1199944834 - - PREDICTED: uncharacterized exonuclease domain-containing protein At3g15140 [Jatropha curcas]
3 Hb_011016_090 0.121958116 - - PREDICTED: 50S ribosomal protein L24, chloroplastic [Populus euphratica]
4 Hb_006502_080 0.125948435 - - -
5 Hb_002259_150 0.1278691788 - - BnaC04g40780D [Brassica napus]
6 Hb_000380_010 0.1300727508 - - PREDICTED: uncharacterized protein LOC105640155 isoform X3 [Jatropha curcas]
7 Hb_028639_050 0.1342102534 - - Anopheles gambiae str. PEST AGAP012660-PA [Anopheles gambiae str. PEST]
8 Hb_007012_020 0.1351426681 - - hypothetical protein POPTR_0005s11940g [Populus trichocarpa]
9 Hb_004453_150 0.1370148139 - - BnaC02g13240D [Brassica napus]
10 Hb_000453_260 0.1373085684 - - PREDICTED: armadillo repeat-containing protein 7 isoform X1 [Vitis vinifera]
11 Hb_005656_050 0.1389285384 - - PREDICTED: protein FAM32A-like [Jatropha curcas]
12 Hb_005305_060 0.1426161634 - - hypothetical protein MIMGU_mgv1a015111mg [Erythranthe guttata]
13 Hb_010298_010 0.1427527055 - - PREDICTED: uncharacterized protein At2g02148 [Jatropha curcas]
14 Hb_000963_190 0.1440064476 - - Glutamine amidotransferase subunit pdxT, putative [Ricinus communis]
15 Hb_000175_400 0.1447406219 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000193_350 0.1449008107 - - eukaryotic translation initiation factor 5A isoform VI [Hevea brasiliensis]
17 Hb_000062_420 0.1452770658 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004117_180 0.1483022626 - - -
19 Hb_007317_060 0.1493197291 - - 60S ribosomal protein L10aB [Hevea brasiliensis]
20 Hb_002197_030 0.1501206622 - - PREDICTED: MATH domain-containing protein At5g43560-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000329_770 Hb_000329_770 Hb_015057_010 Hb_015057_010 Hb_000329_770--Hb_015057_010 Hb_011016_090 Hb_011016_090 Hb_000329_770--Hb_011016_090 Hb_006502_080 Hb_006502_080 Hb_000329_770--Hb_006502_080 Hb_002259_150 Hb_002259_150 Hb_000329_770--Hb_002259_150 Hb_000380_010 Hb_000380_010 Hb_000329_770--Hb_000380_010 Hb_028639_050 Hb_028639_050 Hb_000329_770--Hb_028639_050 Hb_004453_150 Hb_004453_150 Hb_015057_010--Hb_004453_150 Hb_000963_190 Hb_000963_190 Hb_015057_010--Hb_000963_190 Hb_001454_140 Hb_001454_140 Hb_015057_010--Hb_001454_140 Hb_001235_070 Hb_001235_070 Hb_015057_010--Hb_001235_070 Hb_015057_010--Hb_000380_010 Hb_009558_020 Hb_009558_020 Hb_015057_010--Hb_009558_020 Hb_000189_530 Hb_000189_530 Hb_011016_090--Hb_000189_530 Hb_000175_400 Hb_000175_400 Hb_011016_090--Hb_000175_400 Hb_000193_350 Hb_000193_350 Hb_011016_090--Hb_000193_350 Hb_002259_030 Hb_002259_030 Hb_011016_090--Hb_002259_030 Hb_011016_090--Hb_004453_150 Hb_000032_540 Hb_000032_540 Hb_011016_090--Hb_000032_540 Hb_032927_010 Hb_032927_010 Hb_006502_080--Hb_032927_010 Hb_000812_040 Hb_000812_040 Hb_006502_080--Hb_000812_040 Hb_007012_020 Hb_007012_020 Hb_006502_080--Hb_007012_020 Hb_136731_010 Hb_136731_010 Hb_006502_080--Hb_136731_010 Hb_067776_010 Hb_067776_010 Hb_006502_080--Hb_067776_010 Hb_007317_060 Hb_007317_060 Hb_002259_150--Hb_007317_060 Hb_002272_260 Hb_002272_260 Hb_002259_150--Hb_002272_260 Hb_102156_010 Hb_102156_010 Hb_002259_150--Hb_102156_010 Hb_100777_010 Hb_100777_010 Hb_002259_150--Hb_100777_010 Hb_002259_150--Hb_004453_150 Hb_002259_150--Hb_000193_350 Hb_000380_010--Hb_007317_060 Hb_008173_120 Hb_008173_120 Hb_000380_010--Hb_008173_120 Hb_005117_010 Hb_005117_010 Hb_000380_010--Hb_005117_010 Hb_009543_030 Hb_009543_030 Hb_000380_010--Hb_009543_030 Hb_000380_010--Hb_007012_020 Hb_000453_260 Hb_000453_260 Hb_028639_050--Hb_000453_260 Hb_004502_050 Hb_004502_050 Hb_028639_050--Hb_004502_050 Hb_005305_060 Hb_005305_060 Hb_028639_050--Hb_005305_060 Hb_002197_030 Hb_002197_030 Hb_028639_050--Hb_002197_030 Hb_013405_130 Hb_013405_130 Hb_028639_050--Hb_013405_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.06435 1.89639 1.62438 2.86993 10.1294 40.3093
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.5457 16.2513 9.92947 4.62113 2.70191

CAGE analysis