Hb_000329_780

Information

Type -
Description -
Location Contig329: 576535-588276
Sequence    

Annotation

kegg
ID pop:POPTR_0403s00200g
description hypothetical protein
nr
ID XP_006388011.1
description hypothetical protein POPTR_0403s00200g [Populus trichocarpa]
swissprot
ID Q9SD53
description UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=2 SV=1
trembl
ID U7DVB5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0403s00200g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34591: 576756-577729
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000329_780 0.0 - - hypothetical protein POPTR_0403s00200g [Populus trichocarpa]
2 Hb_006831_090 0.0437055671 - - PREDICTED: uncharacterized protein LOC105642125 isoform X1 [Jatropha curcas]
3 Hb_002600_170 0.0491213447 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002119_100 0.050520284 - - cytochrome B561, putative [Ricinus communis]
5 Hb_002374_180 0.0528193211 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-related [Jatropha curcas]
6 Hb_008536_020 0.0551355675 - - PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Jatropha curcas]
7 Hb_000031_180 0.0579868174 - - sarcosine oxidase, putative [Ricinus communis]
8 Hb_004032_280 0.0583916267 - - PREDICTED: uncharacterized protein LOC105635149 [Jatropha curcas]
9 Hb_007483_090 0.0633046668 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002740_050 0.0700922219 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86-like [Populus euphratica]
11 Hb_000599_150 0.0720921985 - - PREDICTED: probable arabinose 5-phosphate isomerase [Jatropha curcas]
12 Hb_000520_040 0.0729008904 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
13 Hb_027472_060 0.0757575383 transcription factor TF Family: GRAS DELLA protein GAI1, putative [Ricinus communis]
14 Hb_015561_010 0.0768914245 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000500_240 0.0776647915 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005532_030 0.0779104169 - - DNA binding protein, putative [Ricinus communis]
17 Hb_005337_100 0.0787956731 - - PREDICTED: uncharacterized protein LOC105629349 [Jatropha curcas]
18 Hb_002572_040 0.0807463496 - - PREDICTED: uncharacterized protein LOC105635149 [Jatropha curcas]
19 Hb_166718_010 0.0816232236 - - heat-shock protein, putative [Ricinus communis]
20 Hb_005842_010 0.0816405162 - - nitrate transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_000329_780 Hb_000329_780 Hb_006831_090 Hb_006831_090 Hb_000329_780--Hb_006831_090 Hb_002600_170 Hb_002600_170 Hb_000329_780--Hb_002600_170 Hb_002119_100 Hb_002119_100 Hb_000329_780--Hb_002119_100 Hb_002374_180 Hb_002374_180 Hb_000329_780--Hb_002374_180 Hb_008536_020 Hb_008536_020 Hb_000329_780--Hb_008536_020 Hb_000031_180 Hb_000031_180 Hb_000329_780--Hb_000031_180 Hb_006831_090--Hb_002600_170 Hb_004032_280 Hb_004032_280 Hb_006831_090--Hb_004032_280 Hb_006831_090--Hb_002374_180 Hb_006831_090--Hb_008536_020 Hb_172426_070 Hb_172426_070 Hb_006831_090--Hb_172426_070 Hb_002600_170--Hb_002374_180 Hb_002600_170--Hb_008536_020 Hb_002600_170--Hb_004032_280 Hb_005532_030 Hb_005532_030 Hb_002600_170--Hb_005532_030 Hb_007483_090 Hb_007483_090 Hb_002119_100--Hb_007483_090 Hb_002062_010 Hb_002062_010 Hb_002119_100--Hb_002062_010 Hb_003417_050 Hb_003417_050 Hb_002119_100--Hb_003417_050 Hb_002740_050 Hb_002740_050 Hb_002119_100--Hb_002740_050 Hb_015561_010 Hb_015561_010 Hb_002119_100--Hb_015561_010 Hb_006075_030 Hb_006075_030 Hb_002374_180--Hb_006075_030 Hb_002374_180--Hb_005532_030 Hb_002374_180--Hb_008536_020 Hb_000520_040 Hb_000520_040 Hb_008536_020--Hb_000520_040 Hb_008536_020--Hb_004032_280 Hb_000599_150 Hb_000599_150 Hb_000031_180--Hb_000599_150 Hb_000031_180--Hb_004032_280 Hb_027472_060 Hb_027472_060 Hb_000031_180--Hb_027472_060 Hb_000031_180--Hb_002119_100 Hb_000031_180--Hb_006831_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.227121 2.18639 3.143 0.00668229 0.0124784
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.111295 3.6641

CAGE analysis